Martin Jurk
9c022ffb88
refactor and clean up
2025-12-04 15:47:12 +01:00
Martin Jurk
6525bb45e4
refactor
2025-12-04 11:36:15 +01:00
martin.jurk
c8ed52e73e
endpoint with api key
2025-12-03 13:53:12 +01:00
Martin Jurk
371ed7f26e
trafic error fixed
2025-12-01 16:41:45 +01:00
Martin Jurk
6ffa4260b9
volume changed /srv/docker/data
2025-12-01 13:31:52 +01:00
martin.jurk
cdbc25270a
missing Sites env error
2025-11-25 15:48:02 +01:00
Martin Jurk
02a3a87ebd
script to optional use omics
2025-11-25 08:35:09 +01:00
Martin Jurk
b8bef62ed7
wrong focus id
2025-11-24 15:28:24 +01:00
Martin Jurk
919e705d35
omic test env
2025-11-24 15:12:01 +01:00
Martin Jurk
e4cfd41874
explorer error host fix
2025-11-21 10:26:28 +01:00
Martin Jurk
bd648b027b
test lens2 migration
2025-11-12 15:16:17 +01:00
Niklas Reimer
ab6e05826f
feat(dnpm): set timezone to Europe/Berlin ( #359 )
2025-11-12 10:25:20 +01:00
DavidCroftDKFZ
394dcc2567
Directory sync: token login and cron change ( #351 )
...
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.
The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.
Relevant changes have been made to the documentation.
Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-11-11 09:43:08 +01:00
djuarezgf
58d3e6487c
feat: add nNGM project ( #340 )
2025-11-06 16:47:50 +01:00
Pierre Delpy
230ff1debb
feat: add PSCC
...
* add pscc and prepare lens2 deployment
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-11-05 15:18:00 +01:00
DavidCroftDKFZ
6dea7c8fef
Directory sync: inherit host timezone ( #354 )
...
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
2025-11-05 11:02:26 +01:00
djuarezgf
66a1bd1122
docs: add initial documentation for Samply.Exporter and Samply.Teiler ( #350 )
2025-10-20 11:16:41 +02:00
Tim Schumacher
85957b3d48
Update focus tags: no project specific images anymore
2025-10-16 13:39:58 +02:00
Jan
b31f2aff7d
fix: don't run secret sync for minimal ( #349 )
2025-10-15 10:45:42 +02:00
Jan
eab7700404
feat: add bridgehead check command ( #342 )
2025-09-30 11:47:51 +02:00
Jan
00b10f3ae6
fix: only pass CQL_PROJECTS_ENABLED to focus if set ( #344 )
2025-09-30 11:39:40 +02:00
Jan
d1f5820d0f
feat: allow cql queries for exliquid ( #343 )
2025-09-30 11:01:14 +02:00
Tim Schumacher
8a35785a24
feat: add scout module ( #339 )
2025-09-02 13:23:34 +02:00
Jan
e0754853d8
feat(dnpm): change to new api-gateway image ( #337 )
2025-08-19 16:35:52 +02:00
Jan
4407a87644
chore: add more options to transfair ( #325 )
2025-08-19 16:32:41 +02:00
Jan
d0851d80a0
fix: adapt to transfair cli changes ( #319 )
2025-08-19 15:48:05 +02:00
djuarezgf
ada3226044
Replace hardcoded image: ...:develop references with version variables ( #335 )
...
* added: Teiler Dashboard Version
* added: MTBA Version
* added: beam proxy tag version
2025-07-30 11:21:10 +02:00
Paul-Christian Volkmer
a2e7330cee
docs: Add ghcr.io to URL list ( #321 )
2025-07-25 10:58:56 +02:00
Jan
9c8d0ee8f5
fix(dnpm): fix env subsitution ( #333 )
2025-07-25 10:58:07 +02:00
djuarezgf
fcad7104f0
mtba: fallback to keycloak test server pending migration
2025-07-23 09:53:14 +02:00
djuarezgf
7e13e251f8
feat: migrate PSP to Authentik ( #329 )
2025-07-22 11:34:49 +02:00
Jan
2cfdc3ac3e
feat(dnpm): allow setting custom dnpm image tag ( #326 )
2025-07-07 15:36:14 +02:00
djuarezgf
43b24c2a62
Fixed: Authentik URL for Opal ( #328 )
...
* Fixed: Authentik URL for Opal
* Removed: Unnecessary OIDC config in CCE and BBMRI
* KR with basic auth instead of OIDC
2025-07-07 15:35:54 +02:00
djuarezgf
8414604257
feat: migrate OIDC Configuration from Keycloak to Authentik ( #327 )
...
* Change: Authentik instead of Keycloak in CCP
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-07-04 14:26:19 +02:00
Jan
4c6f9e0f13
feat: remove local rstudio ( #322 )
2025-06-27 10:55:53 +02:00
djuarezgf
a1cdc2659d
CCE Teiler and Export ( #323 )
...
* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2025-06-25 15:53:29 +02:00
Pierre Delpy
92bc0557a3
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
...
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-06-25 14:58:20 +02:00
djuarezgf
141f1f22d0
Use relative paths in teiler ( #320 )
2025-06-18 17:04:09 +02:00
Tobias Kussel
b4a788e010
docs: close Exporter code block in readme ( #318 )
2025-06-16 14:23:59 +02:00
djuarezgf
c33fbfc8bc
fix: Create Exporter User only if Exporter is enabled ( #317 )
2025-06-11 09:34:41 +02:00
Enola Knezevic
faa8abd4ee
chore: update eric.acc.root.crt.pem ( #316 )
2025-06-10 16:48:22 +02:00
djuarezgf
7693289d4d
docs: add Teiler and Exporter to the main README.md ( #315 )
...
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2025-06-10 11:03:18 +02:00
djuarezgf
d482324361
feat: add Teiler and Exporter in BBMRI ( #312 )
...
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-06-05 16:55:03 +02:00
Martin Lablans
b7a42f3d3b
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2025-06-04 14:22:34 +02:00
Tim Schumacher
fd013232f5
Cache public organoid dashboard SQL query ( #309 )
2025-05-23 15:26:59 +02:00
DavidCroftDKFZ
eb52554892
docs: add faq ( #288 )
2025-05-22 18:10:40 +02:00
DavidCroftDKFZ
08c695e960
docs: Control import from Directory, improve README ( #297 )
2025-05-22 18:03:01 +02:00
DavidCroftDKFZ
1513fe1c6c
Added section relating to clearing data from Blaze ( #303 )
2025-05-22 18:01:43 +02:00
djuarezgf
af08a9fb08
chore: change some teiler variables ( #307 )
2025-05-20 16:24:24 +02:00
djuarezgf
b95f0efbe7
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2025-05-20 09:39:14 +02:00
