djuarezgf
a1cdc2659d
CCE Teiler and Export ( #323 )
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* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2025-06-25 15:53:29 +02:00
Pierre Delpy
92bc0557a3
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-06-25 14:58:20 +02:00
djuarezgf
141f1f22d0
Use relative paths in teiler ( #320 )
2025-06-18 17:04:09 +02:00
Tobias Kussel
b4a788e010
docs: close Exporter code block in readme ( #318 )
2025-06-16 14:23:59 +02:00
djuarezgf
c33fbfc8bc
fix: Create Exporter User only if Exporter is enabled ( #317 )
2025-06-11 09:34:41 +02:00
Enola Knezevic
faa8abd4ee
chore: update eric.acc.root.crt.pem ( #316 )
2025-06-10 16:48:22 +02:00
djuarezgf
7693289d4d
docs: add Teiler and Exporter to the main README.md ( #315 )
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Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2025-06-10 11:03:18 +02:00
djuarezgf
d482324361
feat: add Teiler and Exporter in BBMRI ( #312 )
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Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-06-05 16:55:03 +02:00
Martin Lablans
b7a42f3d3b
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2025-06-04 14:22:34 +02:00
Tim Schumacher
fd013232f5
Cache public organoid dashboard SQL query ( #309 )
2025-05-23 15:26:59 +02:00
DavidCroftDKFZ
eb52554892
docs: add faq ( #288 )
2025-05-22 18:10:40 +02:00
DavidCroftDKFZ
08c695e960
docs: Control import from Directory, improve README ( #297 )
2025-05-22 18:03:01 +02:00
DavidCroftDKFZ
1513fe1c6c
Added section relating to clearing data from Blaze ( #303 )
2025-05-22 18:01:43 +02:00
djuarezgf
af08a9fb08
chore: change some teiler variables ( #307 )
2025-05-20 16:24:24 +02:00
djuarezgf
b95f0efbe7
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2025-05-20 09:39:14 +02:00
Torben Brenner
99567e2b40
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2025-05-19 17:01:37 +02:00
Jan
96ff6043a1
feat: allow transfair to talk to services behind the proxy ( #296 )
2025-05-09 13:52:33 +02:00
Jan
844ce3386e
chore(transfair): update transfair config ( #298 )
2025-05-09 11:30:26 +02:00
Martin Lablans
9782bf66b6
Code review: Move to /tmp/bridgehead/...
2025-05-08 09:18:02 +02:00
Tim Schumacher
87f0e8ad7f
Use temp directory for secret sync cache
2025-05-08 09:18:02 +02:00
Jan
7365be3e7b
chore(transfair): add option to disable tls verification ( #295 )
2025-04-17 12:01:45 +02:00
Enola Knezevic
c5d08c50a4
chore: add BBMRI ERIC acceptance env ( #294 )
2025-04-16 15:37:55 +02:00
Jan
72ecaadba8
fix: ssh-tunnel-setup.sh ( #293 )
2025-04-15 11:36:20 +02:00
Jan
2ddd535794
feat: ssh tunnel ( #292 )
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* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2025-04-14 10:45:15 +02:00
Jan
973547c322
chore(transfair): add new gw option ( #291 )
2025-04-11 08:37:31 +02:00
Jan
6b649c9233
feat: expose transfair via traefik ( #290 )
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Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
Tim Schumacher
3144ee5214
Fix GitLab token syncing for BBMRI
2025-03-31 11:08:59 +02:00
janskiba
68804dc71b
feat: add transfair setup to ccp
2025-03-26 13:11:43 +01:00
janskiba
e5aebfe382
chore!: update transfair config
2025-03-26 13:11:43 +01:00
Torben Brenner
6f3aba1eaa
feat: support self-signed cert on ttp ( #283 )
2025-03-12 15:45:55 +01:00
Jan
82ced89b33
chore: unify blaze versioning and upgrade to 0.32 ( #277 )
2025-03-12 12:52:00 +01:00
Martin Lablans
5d94bac0e2
Mount queries_to_cache.conf readonly ( #282 )
2025-03-10 16:03:05 +01:00
Tim Schumacher
83555540f5
chore: update central Secret Sync proxy ID ( #280 )
2025-03-10 12:08:19 +01:00
Pierre Delpy
e396e00178
Fix/ccp cql cache ( #279 )
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* fix: adapt focus caching to new cql and add focus caching for cce and itcc
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-03-07 12:20:38 +01:00
Tim Schumacher
ecb29830e4
Send the origin of /etc/bridgehead repo to Secret Sync
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This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
2025-03-05 11:04:22 +01:00
Torben Brenner
98121c17e8
Make Codeowners Rule apply to all Files in Repo
2025-02-20 17:28:38 +01:00
Torben Brenner
e38511e118
Add Codeowners File
2025-02-20 17:20:54 +01:00
Pierre Delpy
8334fac84d
fix: use correct obds2fhir-rest image
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---------
Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de >
2025-02-20 13:48:10 +01:00
Torben Brenner
8000356b57
docs: explicitly clone main branch ( #269 )
2025-02-07 11:21:43 +01:00
Torben Brenner
74d8e68d96
Merge pull request #258 from samply/feat/routine-connector
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feat: transFAIR
2025-02-07 10:39:54 +01:00
Torben Brenner
c568a56651
refactor: set transfair log to info
2025-02-07 10:30:43 +01:00
Torben Brenner
8384143387
fix: make transfair reach the internal blaze stores
2025-02-07 09:17:17 +01:00
Torben Brenner
8fe73a8123
fix: support mode without ttp
2025-02-07 09:17:07 +01:00
Torben Brenner
bca63e82a9
fix: don't use return in transfairSetup
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For some reason the return not only exits transfairSetup, but also the
bridgehead script
2025-02-06 15:43:37 +01:00
Jan
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
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* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
Jan
e08ff92401
Merge pull request #268 from samply/main
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Main backport
2025-02-05 08:45:35 +01:00
Jan
e3553370b6
feat: unify version handeling ( #265 )
2025-01-29 13:17:59 +01:00
Jan
1ad73d8f82
fix: properly load oidc secrets ( #267 )
2025-01-29 10:59:27 +01:00
Tobias Kussel
0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link
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Fixed Docker Hub URL list link
2025-01-29 09:52:26 +01:00
Martin Lablans
615990b92a
Use secret-sync for gitpassword ( #257 )
...
---------
Co-authored-by: Tim Schumacher <tim@tschumacher.net >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de >
2025-01-28 14:53:49 +01:00
