a765f6619f
exporter, reporter, teiler, auth for them
2025-05-26 10:32:23 +02:00
8652b7c7ea
Test docker image for bbmri teiler-dashboard
2025-05-26 10:32:23 +02:00
b8c8db2ffc
Test image
2025-05-26 10:32:23 +02:00
52e0a7cd13
Added: Exporter and Teiler for BBMRI
2025-05-26 10:32:21 +02:00
f3166641a0
fix for the fix of the fix
2025-05-26 10:29:35 +02:00
ffaa8922ba
some more adjustments
2025-05-26 10:29:35 +02:00
fc0028a14d
fix: add postgres tag version
2025-05-26 10:29:35 +02:00
05cc2d49ed
breakmorestuff: hardcoded ccp in modules
2025-05-26 10:29:35 +02:00
53be4c09d6
fix: disable secret sync for now
2025-05-26 10:29:35 +02:00
0540957120
fix: added variables for secret sync
2025-05-26 10:29:35 +02:00
1e5dd36912
feat: enable exporter and teiler module in bbmri
2025-05-26 10:29:35 +02:00
fd013232f5
Cache public organoid dashboard SQL query ( #309 )
2025-05-23 15:26:59 +02:00
eb52554892
docs: add faq ( #288 )
2025-05-22 18:10:40 +02:00
08c695e960
docs: Control import from Directory, improve README ( #297 )
2025-05-22 18:03:01 +02:00
1513fe1c6c
Added section relating to clearing data from Blaze ( #303 )
2025-05-22 18:01:43 +02:00
af08a9fb08
chore: change some teiler variables ( #307 )
2025-05-20 16:24:24 +02:00
b95f0efbe7
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2025-05-20 09:39:14 +02:00
99567e2b40
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2025-05-19 17:01:37 +02:00
96ff6043a1
feat: allow transfair to talk to services behind the proxy ( #296 )
2025-05-09 13:52:33 +02:00
844ce3386e
chore(transfair): update transfair config ( #298 )
2025-05-09 11:30:26 +02:00
9782bf66b6
Code review: Move to /tmp/bridgehead/...
2025-05-08 09:18:02 +02:00
87f0e8ad7f
Use temp directory for secret sync cache
2025-05-08 09:18:02 +02:00
7365be3e7b
chore(transfair): add option to disable tls verification ( #295 )
2025-04-17 12:01:45 +02:00
c5d08c50a4
chore: add BBMRI ERIC acceptance env ( #294 )
2025-04-16 15:37:55 +02:00
72ecaadba8
fix: ssh-tunnel-setup.sh ( #293 )
2025-04-15 11:36:20 +02:00
2ddd535794
feat: ssh tunnel ( #292 )
...
* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2025-04-14 10:45:15 +02:00
973547c322
chore(transfair): add new gw option ( #291 )
2025-04-11 08:37:31 +02:00
6b649c9233
feat: expose transfair via traefik ( #290 )
...
Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
3144ee5214
Fix GitLab token syncing for BBMRI
2025-03-31 11:08:59 +02:00
68804dc71b
feat: add transfair setup to ccp
2025-03-26 13:11:43 +01:00
e5aebfe382
chore!: update transfair config
2025-03-26 13:11:43 +01:00
6f3aba1eaa
feat: support self-signed cert on ttp ( #283 )
2025-03-12 15:45:55 +01:00
82ced89b33
chore: unify blaze versioning and upgrade to 0.32 ( #277 )
2025-03-12 12:52:00 +01:00
5d94bac0e2
Mount queries_to_cache.conf readonly ( #282 )
2025-03-10 16:03:05 +01:00
83555540f5
chore: update central Secret Sync proxy ID ( #280 )
2025-03-10 12:08:19 +01:00
e396e00178
Fix/ccp cql cache ( #279 )
...
* fix: adapt focus caching to new cql and add focus caching for cce and itcc
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-03-07 12:20:38 +01:00
ecb29830e4
Send the origin of /etc/bridgehead repo to Secret Sync
...
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
2025-03-05 11:04:22 +01:00
98121c17e8
Make Codeowners Rule apply to all Files in Repo
2025-02-20 17:28:38 +01:00
e38511e118
Add Codeowners File
2025-02-20 17:20:54 +01:00
8334fac84d
fix: use correct obds2fhir-rest image
...
---------
Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de >
2025-02-20 13:48:10 +01:00
8000356b57
docs: explicitly clone main branch ( #269 )
2025-02-07 11:21:43 +01:00
74d8e68d96
Merge pull request #258 from samply/feat/routine-connector
...
feat: transFAIR
2025-02-07 10:39:54 +01:00
c568a56651
refactor: set transfair log to info
2025-02-07 10:30:43 +01:00
8384143387
fix: make transfair reach the internal blaze stores
2025-02-07 09:17:17 +01:00
8fe73a8123
fix: support mode without ttp
2025-02-07 09:17:07 +01:00
bca63e82a9
fix: don't use return in transfairSetup
...
For some reason the return not only exits transfairSetup, but also the
bridgehead script
2025-02-06 15:43:37 +01:00
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
...
* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
e08ff92401
Merge pull request #268 from samply/main
...
Main backport
2025-02-05 08:45:35 +01:00
e3553370b6
feat: unify version handeling ( #265 )
2025-01-29 13:17:59 +01:00
1ad73d8f82
fix: properly load oidc secrets ( #267 )
2025-01-29 10:59:27 +01:00
