samply/bridgehead
1
0
Fork 0
mirror of https://github.com/samply/bridgehead.git synced 2026-04-21 06:50:41 +02:00
Code Issues Packages Projects Releases Wiki Activity
1,064 Commits 68 Branches 0 Tags
b726af89079d34ed932205bef311f9885a114a76
Commit Graph

1064 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Manoj Waikar b726af8907 Use the main image name for cce explorer. (#360) 
- instead of pr1 name
 2026-01-28 13:52:38 +01:00
Manoj Waikar 8abec14e0a Add APP_spot_KEY env var under the beam-proxy section. (#358) 2026-01-28 13:52:38 +01:00
Niklas Reimer 4dbc84efb5 feat(dnpm): set timezone to Europe/Berlin (#359) 2026-01-28 13:52:38 +01:00
DavidCroftDKFZ 390f91d722 Directory sync: token login and cron change (#351) 
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.

The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.

Relevant changes have been made to the documentation.

Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2026-01-28 13:52:38 +01:00
djuarezgf 92b03a868c feat: add nNGM project (#340) 2026-01-28 13:52:38 +01:00
Pierre Delpy fca56976e6 feat: add PSCC 
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:38 +01:00
DavidCroftDKFZ e96b77bb77 Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2026-01-28 13:52:38 +01:00
djuarezgf 790a90787e docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2026-01-28 13:52:38 +01:00
Tim Schumacher e1bcaaea3d Update focus tags: no project specific images anymore 2026-01-28 13:52:38 +01:00
Jan 8f2fd1af1f fix: don't run secret sync for minimal (#349) 2026-01-28 13:52:38 +01:00
Jan e440945f34 feat: add bridgehead check command (#342) 2026-01-28 13:52:38 +01:00
Jan 54d6fec7d1 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2026-01-28 13:52:38 +01:00
Jan 313c3f65b3 feat: allow cql queries for exliquid (#343) 2026-01-28 13:52:38 +01:00
Tim Schumacher d2df758017 feat: add scout module (#339) 2026-01-28 13:52:38 +01:00
Jan 6d7659c049 feat(dnpm): change to new api-gateway image (#337) 2026-01-28 13:52:38 +01:00
Jan 50ae129083 chore: add more options to transfair (#325) 2026-01-28 13:52:37 +01:00
Jan 31c588afc2 fix: adapt to transfair cli changes (#319) 2026-01-28 13:52:37 +01:00
djuarezgf e728def9d4 Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2026-01-28 13:52:37 +01:00
Paul-Christian Volkmer f4ed80a00c docs: Add ghcr.io to URL list (#321) 2026-01-28 13:52:37 +01:00
Jan ed5f319d79 fix(dnpm): fix env subsitution (#333) 2026-01-28 13:52:37 +01:00
djuarezgf 5ce1f6391b mtba: fallback to keycloak test server pending migration 2026-01-28 13:52:37 +01:00
djuarezgf 3589dede55 feat: migrate PSP to Authentik (#329) 2026-01-28 13:52:37 +01:00
Jan 893f0332f9 feat(dnpm): allow setting custom dnpm image tag (#326) 2026-01-28 13:52:37 +01:00
djuarezgf 1b15a31c1b Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2026-01-28 13:52:37 +01:00
djuarezgf 9b3a21b0c3 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
Jan 7cfa81d821 feat: remove local rstudio (#322) 2026-01-28 13:52:37 +01:00
djuarezgf 28fd775ba1 CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:52:37 +01:00
Pierre Delpy 145b685d1c fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:52:37 +01:00
djuarezgf 68b599e305 Use relative paths in teiler (#320) 2026-01-28 13:52:37 +01:00
Tobias Kussel 957514042c docs: close Exporter code block in readme (#318) 2026-01-28 13:52:37 +01:00
djuarezgf 99d76e7d08 fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:52:37 +01:00
Enola Knezevic d911698986 chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:52:37 +01:00
djuarezgf 949fe02f79 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
djuarezgf b6a14da80b feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
Martin Lablans b4296349cd chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:52:37 +01:00
Tim Schumacher 64a14a0048 Cache public organoid dashboard SQL query (#309) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ 3a2fd51bf5 docs: add faq (#288) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ f54ef47f57 docs: Control import from Directory, improve README (#297) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ b7cdacb00b Added section relating to clearing data from Blaze (#303) 2026-01-28 13:52:37 +01:00
djuarezgf 4b700f8c34 chore: change some teiler variables (#307) 2026-01-28 13:52:37 +01:00
djuarezgf 600131862c fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:52:37 +01:00
Torben Brenner 97eb50b93f fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:52:37 +01:00
Jan 63f402269c feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:52:37 +01:00
Jan 95272dd7ac chore(transfair): update transfair config (#298) 2026-01-28 13:52:37 +01:00
Martin Lablans f4b6c9aa84 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:52:37 +01:00
Tim Schumacher 1e027b6952 Use temp directory for secret sync cache 2026-01-28 13:52:37 +01:00
Jan 5d5962ae2d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:52:37 +01:00
Enola Knezevic 689cc68e93 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:52:37 +01:00
Jan beba01354d fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:52:37 +01:00
Jan ce1665050c feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:52:37 +01:00