Manoj Waikar
b726af8907
Use the main image name for cce explorer. ( #360 )
...
- instead of pr1 name
2026-01-28 13:52:38 +01:00
Manoj Waikar and Manoj Waikar
8abec14e0a
Add APP_spot_KEY env var under the beam-proxy section. ( #358 )
2026-01-28 13:52:38 +01:00
Niklas Reimer and Manoj Waikar
4dbc84efb5
feat(dnpm): set timezone to Europe/Berlin ( #359 )
2026-01-28 13:52:38 +01:00
390f91d722
Directory sync: token login and cron change ( #351 )
...
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.
The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.
Relevant changes have been made to the documentation.
Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2026-01-28 13:52:38 +01:00
djuarezgf and Manoj Waikar
92b03a868c
feat: add nNGM project ( #340 )
2026-01-28 13:52:38 +01:00
fca56976e6
feat: add PSCC
...
* add pscc and prepare lens2 deployment
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:52:38 +01:00
DavidCroftDKFZ and Manoj Waikar
e96b77bb77
Directory sync: inherit host timezone ( #354 )
...
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
2026-01-28 13:52:38 +01:00
djuarezgf and Manoj Waikar
790a90787e
docs: add initial documentation for Samply.Exporter and Samply.Teiler ( #350 )
2026-01-28 13:52:38 +01:00
Tim Schumacher and Manoj Waikar
e1bcaaea3d
Update focus tags: no project specific images anymore
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
8f2fd1af1f
fix: don't run secret sync for minimal ( #349 )
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
e440945f34
feat: add bridgehead check command ( #342 )
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
54d6fec7d1
fix: only pass CQL_PROJECTS_ENABLED to focus if set ( #344 )
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
313c3f65b3
feat: allow cql queries for exliquid ( #343 )
2026-01-28 13:52:38 +01:00
Tim Schumacher and Manoj Waikar
d2df758017
feat: add scout module ( #339 )
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
6d7659c049
feat(dnpm): change to new api-gateway image ( #337 )
2026-01-28 13:52:38 +01:00
Jan and Manoj Waikar
50ae129083
chore: add more options to transfair ( #325 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
31c588afc2
fix: adapt to transfair cli changes ( #319 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
e728def9d4
Replace hardcoded image: ...:develop references with version variables ( #335 )
...
* added: Teiler Dashboard Version
* added: MTBA Version
* added: beam proxy tag version
2026-01-28 13:52:37 +01:00
Paul-Christian Volkmer and Manoj Waikar
f4ed80a00c
docs: Add ghcr.io to URL list ( #321 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
ed5f319d79
fix(dnpm): fix env subsitution ( #333 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
5ce1f6391b
mtba: fallback to keycloak test server pending migration
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
3589dede55
feat: migrate PSP to Authentik ( #329 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
893f0332f9
feat(dnpm): allow setting custom dnpm image tag ( #326 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
1b15a31c1b
Fixed: Authentik URL for Opal ( #328 )
...
* Fixed: Authentik URL for Opal
* Removed: Unnecessary OIDC config in CCE and BBMRI
* KR with basic auth instead of OIDC
2026-01-28 13:52:37 +01:00
9b3a21b0c3
feat: migrate OIDC Configuration from Keycloak to Authentik ( #327 )
...
* Change: Authentik instead of Keycloak in CCP
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
7cfa81d821
feat: remove local rstudio ( #322 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
28fd775ba1
CCE Teiler and Export ( #323 )
...
* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2026-01-28 13:52:37 +01:00
145b685d1c
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
...
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
68b599e305
Use relative paths in teiler ( #320 )
2026-01-28 13:52:37 +01:00
Tobias Kussel and Manoj Waikar
957514042c
docs: close Exporter code block in readme ( #318 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
99d76e7d08
fix: Create Exporter User only if Exporter is enabled ( #317 )
2026-01-28 13:52:37 +01:00
Enola Knezevic and Manoj Waikar
d911698986
chore: update eric.acc.root.crt.pem ( #316 )
2026-01-28 13:52:37 +01:00
949fe02f79
docs: add Teiler and Exporter to the main README.md ( #315 )
...
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2026-01-28 13:52:37 +01:00
b6a14da80b
feat: add Teiler and Exporter in BBMRI ( #312 )
...
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:52:37 +01:00
Martin Lablans and Manoj Waikar
b4296349cd
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2026-01-28 13:52:37 +01:00
Tim Schumacher and Manoj Waikar
64a14a0048
Cache public organoid dashboard SQL query ( #309 )
2026-01-28 13:52:37 +01:00
DavidCroftDKFZ and Manoj Waikar
3a2fd51bf5
docs: add faq ( #288 )
2026-01-28 13:52:37 +01:00
DavidCroftDKFZ and Manoj Waikar
f54ef47f57
docs: Control import from Directory, improve README ( #297 )
2026-01-28 13:52:37 +01:00
DavidCroftDKFZ and Manoj Waikar
b7cdacb00b
Added section relating to clearing data from Blaze ( #303 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
4b700f8c34
chore: change some teiler variables ( #307 )
2026-01-28 13:52:37 +01:00
djuarezgf and Manoj Waikar
600131862c
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2026-01-28 13:52:37 +01:00
Torben Brenner and Manoj Waikar
97eb50b93f
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
63f402269c
feat: allow transfair to talk to services behind the proxy ( #296 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
95272dd7ac
chore(transfair): update transfair config ( #298 )
2026-01-28 13:52:37 +01:00
Martin Lablans and Manoj Waikar
f4b6c9aa84
Code review: Move to /tmp/bridgehead/...
2026-01-28 13:52:37 +01:00
Tim Schumacher and Manoj Waikar
1e027b6952
Use temp directory for secret sync cache
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
5d5962ae2d
chore(transfair): add option to disable tls verification ( #295 )
2026-01-28 13:52:37 +01:00
Enola Knezevic and Manoj Waikar
689cc68e93
chore: add BBMRI ERIC acceptance env ( #294 )
2026-01-28 13:52:37 +01:00
Jan and Manoj Waikar
beba01354d
fix: ssh-tunnel-setup.sh ( #293 )
2026-01-28 13:52:37 +01:00
ce1665050c
feat: ssh tunnel ( #292 )
...
* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2026-01-28 13:52:37 +01:00
Manoj Waikar
Manoj WaikarandManoj Waikar
Niklas ReimerandManoj Waikar
djuarezgfandManoj Waikar
Tim SchumacherandManoj Waikar
Tim SchumacherandManoj Waikar
Paul-Christian VolkmerandManoj Waikar
Tobias KusselandManoj Waikar
Enola KnezevicandManoj Waikar
