Changed the image reference for the ovis-frontend service to use the updated `ovis-frontend` tag, ensuring consistency with the latest deployment standards.
Changed the service name for the OVIS frontend load balancer from `ovis-frontend` to `ovis-frontend-ccp`, ensuring consistency with the updated routing setup.
Replaced the existing middleware for path prefix stripping with a new middleware, ensuring proper handling of the `/ccp-ovis` path. This change enhances the routing setup by integrating both the slash-redirect and prefix-strip middlewares for improved service accessibility.
Configured new environment variables for the ovis-frontend service, including OVIS_PUBLIC_BASE_PATH, PUBLIC_GRAPHQL_URL, PUBLIC_LOGIN_ENABLED, and PUBLIC_OVIS_IMPORT, to enhance service configuration and accessibility.
Introduced a new service, `ovis-traefik-forward-auth`, to handle authentication via oauth2-proxy. Updated Traefik routing for existing services to integrate the new middleware, ensuring secure access control. Adjusted logging in ovis-setup.sh to reflect the addition of the oauth2-proxy middleware in the OVIS setup process.
Changed the image for the ovis-frontend service to use the new `ovis-frontend-ccp` tag, reflecting the latest version. Removed unnecessary environment variables to streamline the configuration.
Collapse the `/ccp-ovis` slash-redirect and prefix-strip flow into one `ovis-frontend-ccp` router by attaching both middlewares in order (redirect, then strip). This removes redundant router labels while preserving canonical `/ccp-ovis -> /ccp-ovis/` behavior and mounted-path forwarding to the frontend service.
Apply the PR #375 review feedback by removing Bridgehead-specific compose/setup overrides
that duplicated upstream OVIS behavior and by switching to the upstream-built Mongo image
that already contains init logic.
- rename CCP OVIS services to consistent upstream-style names (`ovis-*`) and update internal dependencies
- switch Mongo service image from direct `mongo:latest` + host-mounted init script to `docker.verbis.dkfz.de/ovis/ovis-backend-mongodb:latest`
- remove obsolete Mongo init bind mount (`/docker-entrypoint-initdb.d/init.js`) from compose
- drop redundant runtime overrides from compose (`restart`, `command`, `user`, `working_dir`)
- remove duplicated app-default/preprocessor env overrides (`OVIS_PREPROC_*`, misc backend defaults) and keep deployment wiring only
- fix Mongo connection env usage to `ADDRESS` and point services to `ovis-backend-database-mongodb`
- remove temporary root-compat Traefik redirect shim and keep mounted `/ccp-ovis` routing labels
- remove setup-time generation of Mongo init.js and related cache directory prep from `ccp/modules/ovis-setup.sh`
- Replaced GUI_HOST with HOST
- Removed NODE_ENV
- Combine init_onco and backend service
- removed node_modules and .svelte-kit volumes
- removed mongodb volumes
- adjusted http_proxy and https_proxy
- adjusted path prefix from oaut2 to oauth2-ovis
- removed network-mode "host" in fhir-transformer service
- Removed the traefik service and renamed traefik-forward-auth to ovis- with ovis-traefik-forward-auth the labels, however would need help there as i got no knowledge of how OAuth2 works (Torben initialized that container)
- Updated MongoDB service configuration to include a direct initialization script for user and operation collections in the sh instead of in the compose directly
- Adjusted volume paths to only use the /var/cache/bridgehead/ccp directory
- Adjusted frontend and backend service labels for Traefik routing to not use ports
- Cleaned up unnecessary network definitions and volumes.
- Renamed FHIR Server URL to bridgehead-ccp-blaze:8080/fhir
- Removed redundant entrypoint (python main.py) of fhir transformer
* sites moved to etc itcc.comf
* mainzelliste test
* volume
* fix image
* db name chaged
* ingest component test
* clean up
* maizelliste env db
* test server ip
* beam sockets
* teswt socket and task
* secure db and ml
* refactor and patient endpoints
* partner id
* new refactor and encription key generation
* db deleted
* keyset to var/
* feat: add Data Quality Agent configuration and setup
* fix: correct environment variable name in Data Quality Agent configuration
* feat: update Data Quality Agent configuration and setup instructions
* feat: update Data Quality Agent setup and documentation
* feat: add volume configuration for agent data in Data Quality Agent compose file
* feat: update volume configuration for Data Quality Agent in compose file
* Update README.md
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
---------
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
Right now, Directory sync will only be activated if a username has been
specified. It also needs to run if a login token has been specified,
hence the change in this commit.
Tobias Kusselandtm16-medma
tm16-medmaandtm16-medma
Skiba Janandtm16-medma
Tim SchumacherandGitHub
Enola KnezevicandGitHub
Tobias KusselandGitHub
afigueroaDkfzandGitHub
Pierre DelpyandGitHub
Martin JurkandGitHub
Radovan TomášikandGitHub
Patrick SkowronekandGitHub
JanandGitHub
DavidCroftDKFZandGitHub