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bridgehead
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107 Commits

Author SHA1 Message Date
Gerhard Salvini c27536b566 Cherry picked from ehds2 and updated data upload for new scripts 2024-07-16 16:47:57 +02:00
Gerhard Salvini f213e6909a Started adding the new scripts to the README 2024-07-16 16:17:30 +02:00
DavidCroftDKFZ 9e72b04824 Added instructions to stop and start Bridgehead 2024-07-10 14:25:21 +02:00
DavidCroftDKFZ fbe68bc778 Adding more detail to EHDS2-specific installation tasks 2024-07-10 14:18:03 +02:00
Gerhard Salvini 53cdd49fd7 Improved docs, turned off obfuscation 
ECDC does not want obfuscated results.
 2024-03-28 11:04:08 +01:00
Gerhard Salvini 1b82207934 Migrated TransFAIR start logic from launch file to docker-compose 
The start-up logic for TransFAIR is specific to the ECDC/EHDS2 Bridgehead,
and did not belong in the TransFAIR repo. This commit fixes that.

It also honours the change of the TransFAIR branch name for this
project, "ehds2".
 2024-03-26 17:00:42 +01:00
Gerhard Salvini 0d1f425df0 Auto-build focus and transfair 
This auto-build functionality is a workaround for a bug, described in README.

The README now has additional documentation for EHDS2.

The root certificate files have been expanded to contain certificates for
both the ECDC and the DKFZ setup.
 2024-03-18 11:03:50 +01:00
Croft 99956f3477 Added instructions to get latest TransFAIR 2024-02-14 13:10:07 +01:00
Croft b6bfaba855 Removed unnecessary chown 2024-02-14 11:17:28 +01:00
Croft 5bd9baaff7 Corrected things that led to errors during install 2024-02-14 11:16:39 +01:00
Croft 4abe193c58 Made the file type more explicit. 2024-02-13 14:08:53 +01:00
Croft 5e8db39e2a Data needs to be readable 2024-02-13 14:05:48 +01:00
Croft b28a48da0a Needed sudo 2024-02-13 14:02:19 +01:00
Croft 7c2e9af947 Set up sensible volumes for TransFAIR 
Also gave instructions to copy over data file.
 2024-02-13 14:00:21 +01:00
Croft 81e5a6ea3f Explained the file edits for EHDS2 2024-02-13 13:42:55 +01:00
Croft a364a4b3f8 Added instructions for getting EHDS2 branch 2024-02-13 13:35:52 +01:00
Croft 9459e1a979 Inserted ECDC-specific URLs and certificates 
Also updated README to include instructions for manual Beam
registration.
 2024-02-13 13:19:41 +01:00
Croft d5760ed3d0 Modified instructions for ECDC 
Also included a template configuration file.
 2024-02-12 16:40:32 +01:00
DavidCroftDKFZ f3abde1dfd
Merge pull request #138 from samply/documentation/blaze_resources 
Added Blaze performance info to README
 2024-02-09 11:07:24 +01:00
DavidCroftDKFZ 40d991d94e
Merge pull request #124 from samply/documentation/gba_additions 
Mentioned data protection concept and added GBA Firewall change
 2024-01-25 13:42:39 +01:00
d.croft@dkfz-heidelberg.de 28c38ed569 Provided a more general relation between resource count & disk space 2023-12-08 10:37:08 +01:00
Croft 16211cfedf Added Blaze performance info to README 2023-12-05 13:05:10 +01:00
DavidCroftDKFZ 6457b21ac6
Merge pull request #130 from samply/documentation/data_load 
Information about loading data into the Bridgehead's FHIR store
 2023-11-21 11:10:52 +01:00
Croft 5558d4fefc Merge branch 'main' into documentation/gba_additions 2023-11-08 10:05:00 +01:00
Croft 545c6175f5 Replaced reference to "bbmri" with more generic "project". 2023-11-08 09:55:21 +01:00
Croft 096225a77d Incorporated Patrick's comments for PR 130 2023-11-06 09:28:43 +01:00
Torben Brenner 87cc0acecc
Corrected Link to Docker Daemon Proxy Configuration (#129) 2023-10-20 14:18:56 +02:00
Croft d9794a1eea Information about loading data into the Bridgehead's FHIR store 
Added this information because many sites have asked about it.
 2023-10-20 10:21:52 +02:00
Martin Lablans 5ca11d1bf5
Update README.md 2023-09-27 10:06:28 +02:00
Martin Lablans 377b003207 Refactor, add BBMRI-ERIC gitlab 2023-09-27 09:12:48 +02:00
Martin Lablans 0c75ac2810
Add healthchecks 
Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
 2023-09-27 08:48:45 +02:00
Martin Lablans d21c6d7835 Move git/docker proxy config 2023-09-26 13:42:14 +02:00
Martin Lablans de10c8508e readme: URL list 2023-09-26 13:25:26 +02:00
Croft b3ace55898 Mentioned data protection concept and added GBA Firewall change 2023-09-25 13:48:41 +02:00
janskiba c354c450f3 Check if curl is installed 2023-09-21 16:23:22 +00:00
Croft 60e0db00a7 Changed section title in TOC 2023-09-01 14:02:46 +02:00
Croft 42300e923f Corrected URL 2023-08-30 11:53:06 +02:00
Croft 6b025a8f6a Merge branch 'main' into main_tls_docu 2023-08-30 11:52:13 +02:00
Croft dddbf0efd0 Zdenkas updates for Directory and Collection usage 
This updates documentatin only.
 2023-08-29 10:41:25 +02:00
Croft 66deff38a2 Corrected Docker link 2023-08-28 10:24:18 +02:00
Croft eeba6bce39 Added info about git and Docker proxy to documenation. 2023-08-28 10:15:19 +02:00
Croft 705fbeaf97 Added advice for finding PEM files 2023-08-14 13:18:42 +02:00
Martin Lablans e775ec5834
Update README.md 2023-08-01 10:34:06 +02:00
Croft 8c45e1da80 Added URLs that need to be accessible for the installation to work. 2023-07-27 09:44:55 +02:00
Martin Lablans b311ff7831
Docs: Move info about BBMRI-ERIC Directory 2023-07-12 08:53:16 +02:00
Tobias Kussel 3304d2818d Merge branch 'main' into feature/dnpm-connect 2023-06-28 11:45:45 +02:00
Croft 1565907243 Minor text and formatting improvements 2023-06-01 10:47:30 +02:00
Croft 906b98f26e Simplified the Directory registration section 2023-06-01 10:40:48 +02:00
Croft a00fed7df2 Changed as result of onboarding experience on the 30th 
* Proxy and firewall adjustments were highlighted.
* The need to register with the Directory and obtain a default
  Collection ID was mentioned.
 2023-06-01 10:26:14 +02:00
Tobias Kussel ff4fb06ad1 Address review comments 2023-05-19 11:53:03 +00:00