Commit Graph
1098 Commits
Author SHA1 Message Date
Enola KnezevicandGitHub c237aa9c5e Merge pull request #390 from samply/develop
new blaze version and project stuff
2026-06-18 15:07:33 +02:00
Enola KnezevicandGitHub b7a8646e91 latest blaze in acceptance and 1.8 in production (#388) 2026-06-17 13:24:32 +02:00
Tobias KusselandGitHub 54291c06f7 Fix spelling of 'Charite' to 'Charité' in DNPM targets (#389) 2026-06-02 15:03:35 +02:00
Enola KnezevicandGitHub e3a8cf790c use latest blaze in test (#387) 2026-05-29 15:28:04 +02:00
afigueroaDkfzandGitHub 4211528f56 fix: make url dynamic based on host configuration (#386) 2026-05-26 16:16:06 +02:00
Pierre DelpyandGitHub 112be2a2d6 Fix/pscc lens local (#385)
* fix: deployment of local pscc lens instance
2026-05-22 12:58:17 +02:00
Martin JurkandGitHub 47b793668a Feature/ml itcc (#380)
* sites moved to etc itcc.comf

* mainzelliste test

* volume

* fix image

* db name chaged

* ingest component test

* clean up

* maizelliste env db

* test server ip

* beam sockets

* teswt socket and task

* secure db and ml

* refactor and patient endpoints

* partner id

* new refactor and encription key generation

* db deleted

* keyset to var/
2026-05-12 13:56:35 +02:00
Radovan TomášikandGitHub cbf75f632f Fix image reference for data-quality-agent service (#381) 2026-05-11 12:55:44 +02:00
Patrick SkowronekandGitHub 2b7e3ef3a1 fix: replace old dpc link (#384) 2026-05-11 11:35:32 +02:00
JanandGitHub 4083a5919c Merge pull request #379 from samply/develop 2026-04-13 09:20:47 +02:00
JanandGitHub 7a8664a636 fix project check in secret_sync_gitlab_token (#378) 2026-04-10 11:38:28 +02:00
71b25fe490 feat: add Data Quality Agent configuration and setup (#373)
* feat: add Data Quality Agent configuration and setup

* fix: correct environment variable name in Data Quality Agent configuration

* feat: update Data Quality Agent configuration and setup instructions

* feat: update Data Quality Agent setup and documentation

* feat: add volume configuration for agent data in Data Quality Agent compose file

* feat: update volume configuration for Data Quality Agent in compose file

* Update README.md

Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>

---------

Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
2026-04-07 12:48:29 +02:00
Enola KnezevicandGitHub 14f7e74c8a Merge pull request #377 from samply/develop
BBMRI obfuscation and rounding, other people's changes
2026-03-30 15:47:05 +02:00
Pierre DelpyandGitHub bbda99254f feature: add osiris2fhir in cce and minor fixes (#374) 2026-03-17 15:54:25 +01:00
Pierre DelpyandGitHub c1de9b8314 WIP: enable osiris2fhir in PSCC for GR (#372)
enable osiris2fhir in PSCC for GR
2026-02-24 12:09:39 +01:00
DavidCroftDKFZandGitHub 9d3ec957a2 Activate Directory token login (#371)
Right now, Directory sync will only be activated if a username has been
specified. It also needs to run if a login token has been specified,
hence the change in this commit.
2026-02-20 09:27:47 +01:00
Martin JurkandGitHub 7a9f80537b sites moved to etc itcc.comf (#369) 2026-02-10 16:04:33 +01:00
Pierre DelpyandGitHub bff06a6bb0 fix kr deployment (#370) 2026-02-10 11:21:36 +01:00
Martin JurkandGitHub 6923ead6ce feat: itcc lens2 (#365) 2026-01-28 14:28:09 +01:00
Manoj WaikarandGitHub 7dc9e2e663 Changes to make deployed CCE explorer work properly. (#368)
* Changes to make deployed CCE explorer work properly.

In the lens environment section in services:
- add PUBLIC_SPOT_URL value
2026-01-13 10:42:10 +01:00
JanandGitHub 85cfc2514d update beam proxy server used for oauth enrollment (#366) 2025-12-11 11:33:29 +01:00
Enola KnezevicandGitHub dd3387c2f1 test version blaze (#364)
This is the one we need urgently
2025-12-01 12:54:57 +01:00
Enola KnezevicandGitHub a5120ba75b obfuscate BBMRI ERIC way, test blaze version (#363) 2025-12-01 12:50:07 +01:00
Manoj WaikarandGitHub d0c87b40a6 Use the cce-explorer:main image from docker hub (instead of ghcr). (#362) 2025-11-21 14:52:42 +01:00
Pierre DelpyandGitHub 57f49ab5fc feat: migrate pscc to orange cloud broker (#361) 2025-11-21 10:42:21 +01:00
Manoj WaikarandGitHub e2569f4737 Use the main image name for cce explorer. (#360)
- instead of pr1 name
2025-11-20 14:34:33 +01:00
Manoj WaikarandGitHub 56a8aac326 Add APP_spot_KEY env var under the beam-proxy section. (#358) 2025-11-19 09:33:18 +01:00
Niklas ReimerandGitHub ab6e05826f feat(dnpm): set timezone to Europe/Berlin (#359) 2025-11-12 10:25:20 +01:00
394dcc2567 Directory sync: token login and cron change (#351)
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.

The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.

Relevant changes have been made to the documentation.

Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
2025-11-11 09:43:08 +01:00
djuarezgfandGitHub 58d3e6487c feat: add nNGM project (#340) 2025-11-06 16:47:50 +01:00
Pierre DelpyGitHubp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>Jan
230ff1debb feat: add PSCC
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
2025-11-05 15:18:00 +01:00
DavidCroftDKFZandGitHub 6dea7c8fef Directory sync: inherit host timezone (#354)
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
2025-11-05 11:02:26 +01:00
JanandGitHub f50b4237d4 Merge pull request #352 from samply/develop
Release
2025-10-22 10:09:56 +02:00
djuarezgfandGitHub 66a1bd1122 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2025-10-20 11:16:41 +02:00
Tim SchumacherandTim Schumacher 85957b3d48 Update focus tags: no project specific images anymore 2025-10-16 13:39:58 +02:00
JanandGitHub b31f2aff7d fix: don't run secret sync for minimal (#349) 2025-10-15 10:45:42 +02:00
JanandGitHub 0838851993 Merge pull request #345 from samply/develop
Develop main
2025-09-30 14:58:20 +02:00
JanandGitHub eab7700404 feat: add bridgehead check command (#342) 2025-09-30 11:47:51 +02:00
JanandGitHub 00b10f3ae6 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2025-09-30 11:39:40 +02:00
JanandGitHub d1f5820d0f feat: allow cql queries for exliquid (#343) 2025-09-30 11:01:14 +02:00
Tim SchumacherandGitHub 8a35785a24 feat: add scout module (#339) 2025-09-02 13:23:34 +02:00
JanandGitHub af3b7cc3a2 Merge pull request #338 from samply/develop
Develop Main
2025-08-20 11:10:18 +02:00
JanandGitHub e0754853d8 feat(dnpm): change to new api-gateway image (#337) 2025-08-19 16:35:52 +02:00
JanandGitHub 4407a87644 chore: add more options to transfair (#325) 2025-08-19 16:32:41 +02:00
JanandGitHub d0851d80a0 fix: adapt to transfair cli changes (#319) 2025-08-19 15:48:05 +02:00
djuarezgfandGitHub ada3226044 Replace hardcoded image: ...:develop references with version variables (#335)
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
2025-07-30 11:21:10 +02:00
JanandGitHub fad2283e6d Merge pull request #334 from samply/develop
Develop Main
2025-07-25 11:27:14 +02:00
Paul-Christian VolkmerandGitHub a2e7330cee docs: Add ghcr.io to URL list (#321) 2025-07-25 10:58:56 +02:00
JanandGitHub 9c8d0ee8f5 fix(dnpm): fix env subsitution (#333) 2025-07-25 10:58:07 +02:00
JanandGitHub ecbef2cd0c Merge pull request #331 from samply/develop
Develop to Main
2025-07-24 16:15:05 +02:00