DavidCroftDKFZ
cce76bab84
Updated README for the new run/stop scripts
2024-07-16 16:55:08 +02:00
DavidCroftDKFZ
70aca8e99c
Wait longer for Blaze to start
2024-07-10 14:34:14 +02:00
Croft
a738f1468f
Fixed bug in CVS test logic
...
The -f test with a wildcard works OK if there is 0 or 1 CSV files but
breaks if there are 2 or more. The replacement uses ls to check if
there are any CSV files.
2024-06-07 16:08:16 +02:00
Croft
aa122d0bff
Shortened national node names in config
...
For ECDC, the Beam broker URL is very long, so the resulting Beam ID
can be longer than 64 characters, which is too much for the CSR
generation algorithm.
2024-05-17 11:44:37 +02:00
Gerhard Salvini
593f93fffc
Turned off obfuscation, because ECDC does not want this feature
2024-03-28 11:06:10 +01:00
Gerhard Salvini
4588960e19
Removed DKFZ URLs and certificates from EHDS2 branch
2024-03-27 16:08:32 +01:00
Gerhard Salvini
1b82207934
Migrated TransFAIR start logic from launch file to docker-compose
...
The start-up logic for TransFAIR is specific to the ECDC/EHDS2 Bridgehead,
and did not belong in the TransFAIR repo. This commit fixes that.
It also honours the change of the TransFAIR branch name for this
project, "ehds2".
2024-03-26 17:00:42 +01:00
Gerhard Salvini
4880c5cc9b
Remove dependancy on local blazectl image
2024-03-20 11:43:43 +01:00
Gerhard Salvini
b9b44d2530
Using standardized conditions for starting transfair
2024-03-19 09:07:56 +01:00
Gerhard Salvini
0d1f425df0
Auto-build focus and transfair
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This auto-build functionality is a workaround for a bug, described in README.
The README now has additional documentation for EHDS2.
The root certificate files have been expanded to contain certificates for
both the ECDC and the DKFZ setup.
2024-03-18 11:03:50 +01:00
Gerhard Salvini
7a33b54416
Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2
2024-03-15 09:48:46 +01:00
Gerhard Salvini
40e15f4d84
Added extra stuff for EHDS2
...
This includes docker-compose files that include transfair plus
configuration variables specific to EHDS2.
2024-03-15 09:35:49 +01:00
Croft
5bd9baaff7
Corrected things that led to errors during install
2024-02-14 11:16:39 +01:00
Croft
7c2e9af947
Set up sensible volumes for TransFAIR
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Also gave instructions to copy over data file.
2024-02-13 14:00:21 +01:00
Croft
9459e1a979
Inserted ECDC-specific URLs and certificates
...
Also updated README to include instructions for manual Beam
registration.
2024-02-13 13:19:41 +01:00
Croft
d5760ed3d0
Modified instructions for ECDC
...
Also included a template configuration file.
2024-02-12 16:40:32 +01:00
Croft
8af5cf3f01
Changes made for EHDS2
...
The EHDS2 project has initiated a use case for antibiotic resistance
under the control of the ECDC. This branch caters for the ECDC
requirements.
Specifically, it contains the ETL to transform the ECDC CSV format to
FHIR, plus additional configuration options that have been packaged into
the bbmri project.
2024-02-12 16:07:57 +01:00
Martin Lablans
5ba1a1a820
Fix variable visibility
2024-01-09 11:47:02 +01:00
Patrick Skowronek
c4018aae08
fixed gbn broker url
2024-01-09 07:53:44 +01:00
Enola Knezevic
417c158435
GBN broker IDs
2024-01-08 16:26:07 +01:00
Enola Knezevic
00030a6141
GBN variable names
2024-01-08 16:15:46 +01:00
Martin Lablans
29fb0e7099
Use focus tag depending on ENVIRONMENT
2024-01-08 15:49:46 +01:00
Martin Lablans
00cae67fa1
Add missing switch-case for gbn
2024-01-08 15:49:28 +01:00
Martin Lablans
2074461ee7
Use new variable ENVIRONMENT in /etc/bridgehead; defaults to "production".
2024-01-08 13:03:12 +01:00
Patrick Skowronek
954d46efb1
Added test root certs and logic for beam to use test brokers
2024-01-05 11:58:42 +01:00
Tobias Kussel
a80a980cea
Merge pull request #140 from samply/feature/dnpm-node
...
Feature/dnpm node
2023-12-18 10:53:39 +01:00
Tobias Kussel
f66f2755d8
Change landing page path override to /landing
2023-12-15 13:32:00 +00:00
Tobias Kussel
d28a3ac889
Add dnpm node module to bbmri project
2023-12-15 09:46:40 +00:00
Tobias Kussel
c02da838c7
Cleanup dnpm connect module
2023-12-15 09:41:11 +00:00
patrickskowronekdkfz
6b1ea4c74e
Update gbn-setup.sh
2023-09-04 15:54:22 +02:00
Patrick Skowronek
8c8ebb9298
Added gbn broker url and e-mail
2023-09-04 15:30:44 +02:00
patrickskowronekdkfz
0536023ceb
Merge pull request #117 from samply/feature/bbmri_de
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Added broker.bbmri.de root cert
2023-09-04 14:44:38 +02:00
Patrick Skowronek
3a3a9d09a9
Added broker.bbmri.de root cert
2023-09-04 14:30:52 +02:00
Tobias Kussel
169ce2436f
fix dnpm connect env, from bool to string
2023-08-28 17:21:52 +00:00
Tobias Kussel
bba8a03f9f
Use beam-connect:develop for DNPM
2023-08-24 12:22:43 +00:00
Martin Lablans
54d83736c3
Move BBMRI-ERIC, GBN to modules
2023-08-07 15:19:41 +02:00
Martin Lablans
b32a19a7b5
Make Directory Sync a module
2023-08-07 13:00:24 +02:00
Tobias Kussel
dd0c28daf3
Add new dktk root cert
2023-06-30 07:50:18 +00:00
Tobias Kussel
6d94ebd4eb
Add path stripper
2023-06-30 06:02:32 +00:00
Tobias Kussel
f0d423fcf7
Adapt to new beam app syntax
2023-06-28 11:48:47 +02:00
Tobias Kussel
f02587d9fa
Change DNPM broker id
2023-05-25 11:20:18 +00:00
Tobias Kussel
ff4fb06ad1
Address review comments
2023-05-19 11:53:03 +00:00
Tobias Kussel
a18b63e190
Use cached beam-connect image for dnpm
2023-05-17 10:04:35 +00:00
Tobias Kussel
f4134bcfca
Remove DNPM-BwHC experiment
2023-05-17 09:26:55 +00:00
Tobias Kussel
4e7f023b8a
Clean up bwhc startup
2023-05-16 10:56:28 +00:00
Tobias Kussel
c9806ad874
Adapt DNPM configuration
2023-05-15 13:43:01 +02:00
Tobias Kussel
3e1659a38d
Modularize DNPM components
2023-05-10 10:54:05 +00:00
