samply/bridgehead
1
0
Fork 0
mirror of https://github.com/samply/bridgehead.git synced 2026-04-21 06:50:41 +02:00
Code Issues Packages Projects Releases Wiki Activity
1,033 Commits 68 Branches 0 Tags
d9116989869f007c2c0ee9a374460cd3e75e57de
Commit Graph

1033 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Enola Knezevic d911698986 chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:52:37 +01:00
djuarezgf 949fe02f79 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
djuarezgf b6a14da80b feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
Martin Lablans b4296349cd chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:52:37 +01:00
Tim Schumacher 64a14a0048 Cache public organoid dashboard SQL query (#309) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ 3a2fd51bf5 docs: add faq (#288) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ f54ef47f57 docs: Control import from Directory, improve README (#297) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ b7cdacb00b Added section relating to clearing data from Blaze (#303) 2026-01-28 13:52:37 +01:00
djuarezgf 4b700f8c34 chore: change some teiler variables (#307) 2026-01-28 13:52:37 +01:00
djuarezgf 600131862c fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:52:37 +01:00
Torben Brenner 97eb50b93f fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:52:37 +01:00
Jan 63f402269c feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:52:37 +01:00
Jan 95272dd7ac chore(transfair): update transfair config (#298) 2026-01-28 13:52:37 +01:00
Martin Lablans f4b6c9aa84 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:52:37 +01:00
Tim Schumacher 1e027b6952 Use temp directory for secret sync cache 2026-01-28 13:52:37 +01:00
Jan 5d5962ae2d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:52:37 +01:00
Enola Knezevic 689cc68e93 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:52:37 +01:00
Jan beba01354d fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:52:37 +01:00
Jan ce1665050c feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:52:37 +01:00
Jan acb7de11e7 chore(transfair): add new gw option (#291) 2026-01-28 13:52:37 +01:00
Jan 53bee0e5e7 feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2026-01-28 13:52:37 +01:00
Tim Schumacher e00e371421 Fix GitLab token syncing for BBMRI 2026-01-28 13:52:37 +01:00
janskiba 9d96a2ddb0 feat: add transfair setup to ccp 2026-01-28 13:52:37 +01:00
janskiba f198e18c70 chore!: update transfair config 2026-01-28 13:52:37 +01:00
Manoj Waikar 82841a6f04 Fix airgapped-blaze-compose.yml file. 
- BASE_URL & traefik settings
 2025-03-25 15:23:16 +01:00
Manoj Waikar ba6f2c3b11 Modify container name (as it was a duplicate). 2025-03-24 09:50:06 +01:00
Manoj Waikar 39a4231c1f Add airgapped-blaze-{compose,setup} files in cce modules. 
- for testing out airgapped-blaze at VHIO
 2025-03-21 15:15:03 +01:00
Torben Brenner 6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
Jan 82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin Lablans 5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim Schumacher 83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre Delpy e396e00178 Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00
Torben Brenner 98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre Delpy 8334fac84d fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben Brenner 8000356b57 docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner 74d8e68d96 Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
Jan 721627a78f feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
Jan e08ff92401 Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
Jan e3553370b6 feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
Jan 1ad73d8f82 fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias Kussel 0b6fa439ba Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin Lablans 615990b92a Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfz 6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00