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Author SHA1 Message Date
Pierre Delpy
fca56976e6 feat: add PSCC 
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:38 +01:00
DavidCroftDKFZ
e96b77bb77 Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2026-01-28 13:52:38 +01:00
djuarezgf
790a90787e docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2026-01-28 13:52:38 +01:00
Tim Schumacher
e1bcaaea3d Update focus tags: no project specific images anymore 2026-01-28 13:52:38 +01:00
Jan
8f2fd1af1f fix: don't run secret sync for minimal (#349) 2026-01-28 13:52:38 +01:00
Jan
e440945f34 feat: add bridgehead check command (#342) 2026-01-28 13:52:38 +01:00
Jan
54d6fec7d1 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2026-01-28 13:52:38 +01:00
Jan
313c3f65b3 feat: allow cql queries for exliquid (#343) 2026-01-28 13:52:38 +01:00
Tim Schumacher
d2df758017 feat: add scout module (#339) 2026-01-28 13:52:38 +01:00
Jan
6d7659c049 feat(dnpm): change to new api-gateway image (#337) 2026-01-28 13:52:38 +01:00
Jan
50ae129083 chore: add more options to transfair (#325) 2026-01-28 13:52:37 +01:00
Jan
31c588afc2 fix: adapt to transfair cli changes (#319) 2026-01-28 13:52:37 +01:00
djuarezgf
e728def9d4 Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2026-01-28 13:52:37 +01:00
Paul-Christian Volkmer
f4ed80a00c docs: Add ghcr.io to URL list (#321) 2026-01-28 13:52:37 +01:00
Jan
ed5f319d79 fix(dnpm): fix env subsitution (#333) 2026-01-28 13:52:37 +01:00
djuarezgf
5ce1f6391b mtba: fallback to keycloak test server pending migration 2026-01-28 13:52:37 +01:00
djuarezgf
3589dede55 feat: migrate PSP to Authentik (#329) 2026-01-28 13:52:37 +01:00
Jan
893f0332f9 feat(dnpm): allow setting custom dnpm image tag (#326) 2026-01-28 13:52:37 +01:00
djuarezgf
1b15a31c1b Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2026-01-28 13:52:37 +01:00
djuarezgf
9b3a21b0c3 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
Jan
7cfa81d821 feat: remove local rstudio (#322) 2026-01-28 13:52:37 +01:00
djuarezgf
28fd775ba1 CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:52:37 +01:00
Pierre Delpy
145b685d1c fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:52:37 +01:00
djuarezgf
68b599e305 Use relative paths in teiler (#320) 2026-01-28 13:52:37 +01:00
Tobias Kussel
957514042c docs: close Exporter code block in readme (#318) 2026-01-28 13:52:37 +01:00
djuarezgf
99d76e7d08 fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:52:37 +01:00
Enola Knezevic
d911698986 chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:52:37 +01:00
djuarezgf
949fe02f79 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
djuarezgf
b6a14da80b feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:52:37 +01:00
Martin Lablans
b4296349cd chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:52:37 +01:00
Tim Schumacher
64a14a0048 Cache public organoid dashboard SQL query (#309) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
3a2fd51bf5 docs: add faq (#288) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
f54ef47f57 docs: Control import from Directory, improve README (#297) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
b7cdacb00b Added section relating to clearing data from Blaze (#303) 2026-01-28 13:52:37 +01:00
djuarezgf
4b700f8c34 chore: change some teiler variables (#307) 2026-01-28 13:52:37 +01:00
djuarezgf
600131862c fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:52:37 +01:00
Torben Brenner
97eb50b93f fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:52:37 +01:00
Jan
63f402269c feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:52:37 +01:00
Jan
95272dd7ac chore(transfair): update transfair config (#298) 2026-01-28 13:52:37 +01:00
Martin Lablans
f4b6c9aa84 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:52:37 +01:00
Tim Schumacher
1e027b6952 Use temp directory for secret sync cache 2026-01-28 13:52:37 +01:00
Jan
5d5962ae2d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:52:37 +01:00
Enola Knezevic
689cc68e93 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:52:37 +01:00
Jan
beba01354d fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:52:37 +01:00
Jan
ce1665050c feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:52:37 +01:00
Jan
acb7de11e7 chore(transfair): add new gw option (#291) 2026-01-28 13:52:37 +01:00
Jan
53bee0e5e7 feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2026-01-28 13:52:37 +01:00
Tim Schumacher
e00e371421 Fix GitLab token syncing for BBMRI 2026-01-28 13:52:37 +01:00
janskiba
9d96a2ddb0 feat: add transfair setup to ccp 2026-01-28 13:52:37 +01:00
janskiba
f198e18c70 chore!: update transfair config 2026-01-28 13:52:37 +01:00