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11 Commits
hotfix/itc
...
prototype/
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6fe3bb0cc4 | ||
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8770470e90 | ||
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efa38d78bc | ||
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3c85bce8fe | ||
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4246fbd162 | ||
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24dec5a172 | ||
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afe1e37854 | ||
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ccd935701c | ||
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332997963b | ||
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9ed11d63b2 | ||
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80ec87a818 |
@@ -180,6 +180,13 @@ case "$ACTION" in
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;;
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postRun | postUpdate)
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;;
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send-file)
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loadVars
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log "WARNING" "Your are about to send a file to another bridgehead in your network!"
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read -p "Please name the bridgehead you want to send the file to (proxy-id): " RECEIVER_PROXY_ID
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read -p "Continue? (Y/N): " confirm && [[ $confirm == [yY] || $confirm == [yY][eE][sS] ]] || exit 1
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exec $COMPOSE -p $PROJECT -f ./modules/beam-file-compose.yml --profile beam-file-sender run beam-file-sender send --to beamfile.$RECEIVER_PROXY_ID /data/outfile
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;;
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*)
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printUsage
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exit 1
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@@ -22,7 +22,7 @@ services:
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- "traefik.http.routers.blaze_cce.tls=true"
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focus:
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}-dktk
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
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container_name: bridgehead-focus
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environment:
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API_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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@@ -34,7 +34,6 @@ services:
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EPSILON: 0.28
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QUERIES_TO_CACHE: '/queries_to_cache.conf'
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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CQL_PROJECTS_ENABLED: "cce"
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volumes:
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- /srv/docker/bridgehead/cce/queries_to_cache.conf:/queries_to_cache.conf:ro
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depends_on:
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@@ -17,7 +17,6 @@ services:
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BEAM_PROXY_ID: ${SITE_ID}
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BEAM_BROKER_ID: ${BROKER_ID}
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BEAM_APP_ID: "focus"
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PROJECT_METADATA: "cce"
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depends_on:
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- "beam-proxy"
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labels:
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@@ -45,6 +45,7 @@ services:
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BROKER_URL: ${BROKER_URL}
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PROXY_ID: ${PROXY_ID}
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APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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APP_beamfilesend_KEY: ${BEAM_FILE_SEND_SECRET}
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PRIVKEY_FILE: /run/secrets/proxy.pem
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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@@ -5,6 +5,7 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
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FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
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SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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BEAM_FILE_SEND_SECRET="$(echo \"beam-file-send-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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BROKER_URL_FOR_PREREQ=$BROKER_URL
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@@ -24,4 +25,5 @@ do
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done
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transfairSetup
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scoutSetup
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scoutSetup
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beamFileSetup
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@@ -22,7 +22,7 @@ services:
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- "traefik.http.routers.blaze_itcc.tls=true"
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focus:
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}-dktk
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
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container_name: bridgehead-focus
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environment:
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API_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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@@ -34,7 +34,6 @@ services:
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EPSILON: 0.28
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QUERIES_TO_CACHE: '/queries_to_cache.conf'
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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CQL_PROJECTS_ENABLED: "itcc"
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volumes:
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- /srv/docker/bridgehead/itcc/queries_to_cache.conf:/queries_to_cache.conf:ro
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depends_on:
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@@ -17,7 +17,6 @@ services:
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BEAM_PROXY_ID: ${SITE_ID}
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BEAM_BROKER_ID: ${BROKER_ID}
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BEAM_APP_ID: "focus"
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PROJECT_METADATA: "itcc"
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depends_on:
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- "beam-proxy"
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labels:
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@@ -337,7 +337,8 @@ function sync_secrets() {
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}
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function secret_sync_gitlab_token() {
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if [[ "$PROJECT" != "dktk" && "$PROJECT" != "bbmri" ]]; then
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if [ "$PROJECT" == "minimal" ]; then
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log "INFO" "Not running Secret Sync for project minimal"
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return
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fi
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# Map the origin of the git repository /etc/bridgehead to the prefix recognized by Secret Sync
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@@ -397,7 +398,7 @@ function secret_sync_gitlab_token() {
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else
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log "WARN" "Secret Sync failed"
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# Remove the git credential helper
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git -C /etc/bridgehead config --unset credential.helpera
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git -C /etc/bridgehead config --unset credential.helper
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fi
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# In the past the git credential helper was also set for /srv/docker/bridgehead but never used.
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35
modules/beam-file-compose.yml
Normal file
35
modules/beam-file-compose.yml
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@@ -0,0 +1,35 @@
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# NOTE: Current implementation is restricted to a bridgehead only being able to either upload or download data
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services:
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beam-file-sender:
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image: samply/beam-file:${BEAM_FILE_TAG}
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container_name: bridgehead-beam-file-sender
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environment:
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- BEAM_ID=beamfilesend.${PROXY_ID}
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- BEAM_SECRET=${BEAM_FILE_SEND_SECRET}
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- BEAM_URL=http://beam-proxy:8081
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- BIND_ADDR=0.0.0.0:8085
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- API_KEY=${BEAM_FILE_API_KEY}
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# Only uncomment if your are sure what to do
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# ports:
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# - 8085:8085
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volumes:
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- /var/cache/bridgehead/beam-file-out/:/data
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profiles: ["beam-file-sender"]
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beam-file-receiver:
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image: samply/beam-file:${BEAM_FILE_TAG}
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container_name: bridgehead-beam-file-receiver
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environment:
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- BEAM_ID=beamfile.${PROXY_ID}
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- BEAM_SECRET=${BEAM_FILE_SECRET}
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- BEAM_URL=http://beam-proxy:8081
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- API_KEY=${BEAM_FILE_API_KEY}
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command: ["receive", "save", "--outdir", "/data"]
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volumes:
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- /var/cache/bridgehead/beam-file/:/data
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profiles: ["beam-file-receiver"]
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beam-proxy:
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environment:
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APP_beamfile_KEY: ${BEAM_FILE_SECRET}
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profiles: ["beam-file-receiver"]
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11
modules/beam-file-setup.sh
Normal file
11
modules/beam-file-setup.sh
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@@ -0,0 +1,11 @@
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#!/bin/bash -e
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function beamFileSetup() {
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if [ -n "$ENABLE_BEAM_FILE_RECEIVER" ]; then
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echo "Starting beam file in receiver mode"
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OVERRIDE+=" -f ./modules/beam-file-compose.yml --profile beam-file-receiver"
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BEAM_FILE_SECRET="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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BEAM_FILE_API_KEY="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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log INFO "Beam File in Receiver Mode available uses ApiKey ${BEAM_FILE_API_KEY}"
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fi
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}
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@@ -3,4 +3,5 @@ BEAM_TAG=develop
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BLAZE_TAG=main
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POSTGRES_TAG=15.13-alpine
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TEILER_DASHBOARD_TAG=develop
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MTBA_TAG=develop
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MTBA_TAG=develop
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BEAM_FILE_TAG=task-based-files
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