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2 Commits

Author SHA1 Message Date
David Juarez
5dbceba8eb Test 2025-07-30 11:36:18 +02:00
David Juarez
a3a979c522 changed: move teiler groups to teiler backend 2025-07-30 11:25:19 +02:00
12 changed files with 11 additions and 116 deletions

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@@ -176,13 +176,6 @@ case "$ACTION" in
;;
postRun | postUpdate)
;;
send-file)
loadVars
log "WARNING" "Your are about to send a file to another bridgehead in your network!"
read -p "Please name the bridgehead you want to send the file to (proxy-id): " RECEIVER_PROXY_ID
read -p "Continue? (Y/N): " confirm && [[ $confirm == [yY] || $confirm == [yY][eE][sS] ]] || exit 1
exec $COMPOSE -p $PROJECT -f ./modules/beam-file-compose.yml --profile beam-file-sender run beam-file-sender send --to beamfile.$RECEIVER_PROXY_ID /data/outfile
;;
*)
printUsage
exit 1

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@@ -58,7 +58,7 @@ services:
dnpm-backend:
container_name: bridgehead-dnpm-backend
image: ghcr.io/dnpm-dip/api-gateway:latest
image: ghcr.io/dnpm-dip/backend:${DNPM_IMAGE_TAG:-latest}
environment:
- LOCAL_SITE=${ZPM_SITE}:${SITE_NAME} # Format: {Site-ID}:{Site-name}, e.g. UKT:Tübingen
- RD_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}

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@@ -19,7 +19,7 @@ services:
HTTP_RELATIVE_PATH: "/ccp-teiler"
teiler-dashboard:
image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:${TEILER_DASHBOARD_TAG}
image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:test
container_name: bridgehead-teiler-dashboard
labels:
- "traefik.enable=true"
@@ -42,14 +42,12 @@ services:
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
TEILER_ORCHESTRATOR_URL: "/ccp-teiler"
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
TEILER_USER: "${OIDC_USER_GROUP}"
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
teiler-backend:
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:test
container_name: bridgehead-teiler-backend
labels:
- "traefik.enable=true"
@@ -70,3 +68,7 @@ services:
ENABLE_MTBA: "${ENABLE_MTBA}"
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
IDMANAGER_UPLOAD_APIKEY: "${IDMANAGER_UPLOAD_APIKEY}" # Only used to check if the ID Manager is active
TEILER_ROLE_USER: "${OIDC_USER_GROUP}"
TEILER_ROLE_ADMIN: "${OIDC_ADMIN_GROUP}"
TEILER_ROLE_PSP: "${OIDC_PSP_GROUP}"

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@@ -45,7 +45,6 @@ services:
BROKER_URL: ${BROKER_URL}
PROXY_ID: ${PROXY_ID}
APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
APP_beamfilesend_KEY: ${BEAM_FILE_SEND_SECRET}
PRIVKEY_FILE: /run/secrets/proxy.pem
ALL_PROXY: http://forward_proxy:3128
TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs

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@@ -5,7 +5,6 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
BEAM_FILE_SEND_SECRET="$(echo \"beam-file-send-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
BROKER_URL_FOR_PREREQ=$BROKER_URL
@@ -24,6 +23,4 @@ do
source $module
done
transfairSetup
scoutSetup
beamFileSetup
transfairSetup

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@@ -58,7 +58,7 @@ services:
dnpm-backend:
container_name: bridgehead-dnpm-backend
image: ghcr.io/dnpm-dip/api-gateway:latest
image: ghcr.io/dnpm-dip/backend:${DNPM_IMAGE_TAG:-latest}
environment:
- LOCAL_SITE=${ZPM_SITE}:${SITE_NAME} # Format: {Site-ID}:{Site-name}, e.g. UKT:Tübingen
- RD_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}

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@@ -1,35 +0,0 @@
# NOTE: Current implementation is restricted to a bridgehead only being able to either upload or download data
services:
beam-file-sender:
image: samply/beam-file:${BEAM_FILE_TAG}
container_name: bridgehead-beam-file-sender
environment:
- BEAM_ID=beamfilesend.${PROXY_ID}
- BEAM_SECRET=${BEAM_FILE_SEND_SECRET}
- BEAM_URL=http://beam-proxy:8081
- BIND_ADDR=0.0.0.0:8085
- API_KEY=${BEAM_FILE_API_KEY}
# Only uncomment if your are sure what to do
# ports:
# - 8085:8085
volumes:
- /var/cache/bridgehead/beam-file-out/:/data
profiles: ["beam-file-sender"]
beam-file-receiver:
image: samply/beam-file:${BEAM_FILE_TAG}
container_name: bridgehead-beam-file-receiver
environment:
- BEAM_ID=beamfile.${PROXY_ID}
- BEAM_SECRET=${BEAM_FILE_SECRET}
- BEAM_URL=http://beam-proxy:8081
- API_KEY=${BEAM_FILE_API_KEY}
command: ["receive", "save", "--outdir", "/data"]
volumes:
- /var/cache/bridgehead/beam-file/:/data
profiles: ["beam-file-receiver"]
beam-proxy:
environment:
APP_beamfile_KEY: ${BEAM_FILE_SECRET}
profiles: ["beam-file-receiver"]

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@@ -1,11 +0,0 @@
#!/bin/bash -e
function beamFileSetup() {
if [ -n "$ENABLE_BEAM_FILE_RECEIVER" ]; then
echo "Starting beam file in receiver mode"
OVERRIDE+=" -f ./modules/beam-file-compose.yml --profile beam-file-receiver"
BEAM_FILE_SECRET="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
BEAM_FILE_API_KEY="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
log INFO "Beam File in Receiver Mode available uses ApiKey ${BEAM_FILE_API_KEY}"
fi
}

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@@ -1,40 +0,0 @@
volumes:
scout-blaze-data:
services:
traefik:
labels:
- "traefik.http.middlewares.additional-users-auth.basicauth.users=${SCOUT_BASIC_AUTH_USERS}"
scout-blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-scout-blaze
environment:
BASE_URL: "http://bridgehead-scout-blaze:8080"
ENFORCE_REFERENTIAL_INTEGRITY: "false"
volumes:
- "scout-blaze-data:/app/data"
labels:
- "traefik.enable=true"
- "traefik.http.routers.scout-blaze.rule=PathPrefix(`/scout-blaze`)"
- "traefik.http.middlewares.scout-blaze-stripprefix.stripprefix.prefixes=/scout-blaze"
- "traefik.http.services.scout-blaze.loadbalancer.server.port=8080"
- "traefik.http.routers.scout-blaze.middlewares=scout-blaze-stripprefix,additional-users-auth"
- "traefik.http.routers.scout-blaze.tls=true"
scout:
image: samply/scout:main
container_name: bridgehead-scout
configs:
- scout.toml
labels:
- "traefik.enable=true"
- "traefik.http.routers.scout.rule=PathPrefix(`/scout`)"
- "traefik.http.services.scout.loadbalancer.server.port=8080"
- "traefik.http.routers.scout.middlewares=additional-users-auth"
- "traefik.http.routers.scout.tls=true"
configs:
scout.toml:
content: |
fhir_base_url = "http://scout-blaze:8080/fhir"

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@@ -1,8 +0,0 @@
#!/bin/bash -e
function scoutSetup() {
if [[ -n "$ENABLE_SCOUT" && -n "$SCOUT_BASIC_AUTH_USERS" ]]; then
echo "Starting scout."
OVERRIDE+=" -f ./modules/scout-compose.yml"
fi
}

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@@ -10,7 +10,7 @@ services:
- TTP_GW_SOURCE
- TTP_GW_EPIX_DOMAIN
- TTP_GW_GPAS_DOMAIN
- TTP_GW_GPAS_URL
- TTP_TYPE
- TTP_AUTH
- PROJECT_ID_SYSTEM
- FHIR_REQUEST_URL=${FHIR_REQUEST_URL}
@@ -26,7 +26,6 @@ services:
- TLS_DISABLE=${TRANSFAIR_TLS_DISABLE:-false}
- NO_PROXY=${TRANSFAIR_NO_PROXIES}
- ALL_PROXY=http://forward_proxy:3128
command: dic ${TTP_TYPE}
volumes:
- /var/cache/bridgehead/${PROJECT}/transfair:/transfair
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro

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@@ -3,5 +3,4 @@ BEAM_TAG=develop
BLAZE_TAG=main
POSTGRES_TAG=15.13-alpine
TEILER_DASHBOARD_TAG=develop
MTBA_TAG=develop
BEAM_FILE_TAG=task-based-files
MTBA_TAG=develop