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Mono Color

• ae95f14030 export ENVIRONMENT Patrick Skowronek 2024-08-19 08:27:20 +02:00
• 25e1d4fb15 Merge pull request #202 from samply/main_fix_dirsync_passwd Martin Lablans 2024-08-15 13:43:39 +02:00
• 18c9e1bb30 Remove DP statement already present in readme. lablans 2024-08-15 11:43:14 +00:00
• de847f309c Provide defaults lablans 2024-08-15 11:40:02 +00:00
• 3496fa7a0f Let Directory sync handle connection with Blaze DavidCroftDKFZ 2024-08-15 13:36:57 +02:00
• 95574f38be Included Blaze dependency DavidCroftDKFZ 2024-08-15 10:33:28 +02:00
• bff316cde1 Merge pull request #201 from samply/update/landing-page Jan 2024-08-15 10:00:09 +02:00
• b8b81b1242 Fixed environment variable passing for Directory sync DavidCroftDKFZ 2024-08-15 09:17:34 +02:00
• 7c560a2e93 Added env to landing-page Patrick Skowronek 2024-08-15 09:10:37 +02:00
• 4a13395408 Merge pull request #200 from samply/reduce-update-interval Martin Lablans 2024-08-05 08:29:15 +02:00
• 35d6a17778 Fix bridgehead update timer time convention Tobias Kussel 2024-08-01 11:39:03 +02:00
• ecd9269022 Add bridgehead update timer persistance Tobias Kussel 2024-08-01 11:38:25 +02:00
• 5227dc57a7 Fix systemd timer description Tobias Kussel 2024-08-01 11:32:15 +02:00
• 62edaf99e0 Reduce bridgehead update interval to once a day at 6am Tobias Kussel 2024-08-01 11:23:56 +02:00
• 775cef59d6 Merge pull request #199 from samply/feat/ds-orchestrator Tobias Kussel 2024-08-01 10:16:41 +02:00
• 9c941853bd Merge pull request #196 from samply/new-dashboard-backend Tobias Kussel 2024-08-01 10:05:32 +02:00
• aca22fb3e3 Merge pull request #144 from samply/documentation/sharing_vm Martin Lablans 2024-08-01 09:52:28 +02:00
• 33a2505517 Move down, rephrase Martin Lablans 2024-08-01 09:51:49 +02:00
• 83b653e0c3 feat: Configure beam-connect to trust ds-orchestrator beam proxy janskiba 2024-07-30 14:17:22 +00:00
• 2e5aeabca8 Rename fhir2sql module files Tobias Kussel 2024-07-30 07:44:47 +00:00
• af44b6b446 Fix depends_on syntax Tobias Kussel 2024-07-30 07:40:49 +00:00
• 5ed07423f3 fix dashboard-compose davidmscholz 2024-07-30 09:24:07 +02:00
• bc0f46ecc9 Merge pull request #197 from samply/beam-tag Martin Lablans 2024-07-29 15:16:53 +02:00
• 4ab10ff71d In ENVIRONMENT=production, use main tag for Samply.Beam. Martin Lablans 2024-07-29 13:50:30 +02:00
• df08d67839 add optional dashboard module davidmscholz 2024-07-29 10:45:00 +02:00
• 964c5324e6 Merge pull request #160 from samply/main_directory_sync_extra_attributes_and_star_model Torben Brenner 2024-07-26 14:09:39 +02:00
• 023be58528 Merge pull request #195 from samply/feature/caching-ccp Torben Brenner 2024-07-26 14:07:15 +02:00
• 8942b923b3 Added comment for consistency with Directory Sync README DavidCroftDKFZ 2024-07-26 09:57:40 +02:00
• e323c2765f Added ECDC Beam Broker site to list of Firewall exceptions DavidCroftDKFZ 2024-07-26 09:51:46 +02:00
• ca93451357 Added ECDC Beam Broker site to list of Firewall exceptions DavidCroftDKFZ 2024-07-26 09:49:13 +02:00
• 3f8bb158bc Merge branch 'main' into main_directory_sync_extra_attributes_and_star_model DavidCroftDKFZ 2024-07-25 16:54:47 +02:00
• cfa85067f0 initialize develop; add itcc and cce p.delpy@dkfz-heidelberg.de 2024-07-25 11:55:51 +02:00
• c3b770b70f Merge pull request #194 from samply/workaround/secondary-cortex-blaze Torben Brenner 2024-07-25 10:32:38 +02:00
• d316f1c798 add caching in focus Pierre Delpy 2024-07-23 13:01:07 +02:00
• 293810f254 Added: exporter with blaze-secondary djuarezgf 2024-07-18 09:54:16 +02:00
• 6b4480c54b workaround: add second blaze p.delpy@dkfz-heidelberg.de 2024-07-17 09:53:08 +02:00
• 892e2c2cf1 Removed misleading text from stop.sh Gerhard Salvini 2024-07-18 12:56:42 +02:00
• 8c1c0de927 Made scripts executable Gerhard Salvini 2024-07-18 12:52:48 +02:00
• 56cdd0dcc4 Got automatic Bridgehead restart to work DavidCroftDKFZ 2024-07-18 12:47:47 +02:00
• 520c560be0 Got systemctl restart to work locally Gerhard Salvini 2024-07-18 12:31:42 +02:00
• 1b9af45991 Replaced tabs with spaces Gerhard Salvini 2024-07-17 09:35:50 +02:00
• bb81617873 Replaced tabs with spaces Gerhard Salvini 2024-07-17 09:34:46 +02:00
• 353fc010cb Cherry picked the stop/start files from ehds2_develop branch DavidCroftDKFZ 2024-07-17 09:27:32 +02:00
• c15c3962a7 Switched to bridgehead user for git to avoid auth problems DavidCroftDKFZ 2024-07-17 09:24:37 +02:00
• e0fe39ab83 Perform git actions with the bridgehead user, to prevent authentication issues DavidCroftDKFZ 2024-07-16 16:58:13 +02:00
• cce76bab84 Updated README for the new run/stop scripts DavidCroftDKFZ 2024-07-16 16:55:08 +02:00
• c27536b566 Cherry picked from ehds2 and updated data upload for new scripts Gerhard Salvini 2024-07-16 16:47:57 +02:00
• f213e6909a Started adding the new scripts to the README Gerhard Salvini 2024-07-16 16:17:30 +02:00
• 6887264a5b Added infrastructure for running ECDC-Bridgehead under systemctl Gerhard Salvini 2024-07-16 16:08:08 +02:00
• 5b2c3d7725 Using bridgehead user for performing git pull Gerhard Salvini 2024-07-16 16:06:10 +02:00
• a92b2eff76 Merge pull request #193 from samply/Fix-patientlisturl-in-obds2fhir-rest-compose.yml Tobias Kussel 2024-07-16 10:59:53 +02:00
• b36c9ae03e Fix patientlisturl in obds2fhir-rest-compose.yml Pierre Delpy 2024-07-16 10:49:23 +02:00
• 16629f3e45 Merge pull request #192 from samply/hotfix/idmanagementFlag Torben Brenner 2024-07-16 10:20:15 +02:00
• 013d6d219b Provided more detailed instructions on uploading data to a Bridgehead DavidCroftDKFZ 2024-07-15 10:28:21 +02:00
• cc228e20d9 Reordered the Bridgehead restart instructions DavidCroftDKFZ 2024-07-15 09:20:18 +02:00
• 153f654397 Deal with multiple data files, update repos DavidCroftDKFZ 2024-07-12 11:07:06 +02:00
• a8a15aaad8 Update repos on start DavidCroftDKFZ 2024-07-12 09:04:08 +02:00
• 2e8b1dc96c Deal with multiple data files Bridgehead User 2024-07-12 08:45:17 +02:00
• 105495d6cd Made compatible with ehds2 branch Gerhard Salvini 2024-07-10 14:51:16 +02:00
• 93e73838c6 Made comments compatible with ehds2 branch DavidCroftDKFZ 2024-07-10 14:39:46 +02:00
• 70aca8e99c Wait longer for Blaze to start DavidCroftDKFZ 2024-07-10 14:34:14 +02:00
• f925c27791 Suggested more robust Bridgehead start DavidCroftDKFZ 2024-07-10 14:26:46 +02:00
• 9e72b04824 Added instructions to stop and start Bridgehead DavidCroftDKFZ 2024-07-10 14:25:21 +02:00
• 350a4c84af Added extra detail relating to EHDS2 DavidCroftDKFZ 2024-07-10 14:20:40 +02:00
• fbe68bc778 Adding more detail to EHDS2-specific installation tasks DavidCroftDKFZ 2024-07-10 14:18:03 +02:00
• 17f372b06c Implement a gentler way of handling clock skew Gerhard Salvini 2024-07-10 14:02:04 +02:00
• 91dc31d039 fix: use correct ID management flag for oBDS2FHIR Pierre Delpy 2024-07-08 13:54:42 +02:00
• 7c54b6bb08 Merge pull request #191 from samply/fix/oauth-redirect patrickskowronekdkfz 2024-07-03 15:10:28 +02:00
• 9e4bc214ce fix: Fix traefik label for oauth2 redirect janskiba 2024-07-03 13:01:02 +00:00
• b52931e46c Pinned Blaze version DavidCroftDKFZ 2024-07-02 14:11:34 +02:00
• a250d52998 Pinned Blaze version, increased Focus retry count Gerhard Salvini 2024-07-02 14:05:38 +02:00
• 94a38155b5 Merge pull request #190 from samply/feature/obds-fhir patrickskowronekdkfz 2024-07-02 09:19:26 +02:00
• 2ee8e0185a feature: upgrade to oBDS2FHIR Pierre Delpy 2024-07-01 12:46:33 +02:00
• f28e3c2cd2 Remove unnecessary default values Martin Lablans 2024-07-01 15:19:44 +02:00
• 91ff51304b Add new dashboard backend Martin Lablans 2024-07-01 14:54:04 +02:00
• e28b125b93 Merge pull request #189 from samply/fix/updateBlazeVersion Torben Brenner 2024-06-28 14:31:56 +02:00
• f7751b9d92 fix: set blaze to version 0.28 Torben Brenner 2024-06-28 14:29:56 +02:00
• 4da71353cc Merge pull request #188 from samply/fix/blazeDktkNotRunning Torben Brenner 2024-06-28 13:59:20 +02:00
• 0db7df1440 Update docker-compose.yml Torben Brenner 2024-06-28 13:57:30 +02:00
• e309dc495a Improved docker-compose for transFAIR Gerhard Salvini 2024-06-18 15:28:37 +02:00
• 373ba7a543 Merge pull request #187 from samply/feat/focus-retry Enola Knezevic 2024-06-14 17:00:13 +02:00
• e72c996952 feat: allow setting focus retry count and increase default janskiba 2024-06-13 07:29:54 +00:00
• eb0f392e3c Croatia is having problems with a slow starting Blaze, increase Focus retry count DavidCroftDKFZ 2024-06-13 09:25:57 +02:00
• 502eef0cc8 feat: adapt secret sync for bbmri qr_bbmri janskiba 2024-06-12 08:36:28 +00:00
• 4fc53c00bf Fix typo Martin Lablans 2024-06-11 08:41:35 +02:00
• a738f1468f Fixed bug in CVS test logic Croft 2024-06-07 16:08:16 +02:00
• 647aa05c73 Merge pull request #186 from samply/feat/journal-logs patrickskowronekdkfz 2024-06-05 14:58:35 +02:00
• ec9df1feec Update README.md Jan 2024-06-05 14:57:42 +02:00
• a018104e0b feat: Add logs command for journalctl and rename old one to docker-logs janskiba 2024-06-05 12:35:44 +00:00
• 0ca5ad76f1 Changed: to use the generated passwords from cbioportal-setup.sh. Removed: local database files (they have been added in the database image named bridgehead-cbioportal-database) feature/cBioPortal root 2024-06-04 12:11:14 +02:00
• 667048d49f WIP blaze frontend feat/blaze-frontend janskiba 2024-05-28 14:14:36 +02:00
• 68f06c0d9d Merge pull request #185 from samply/update/focus_main patrickskowronekdkfz 2024-05-21 16:21:22 +02:00
• 033da484d1 switch focus of ccp to tag Patrick Skowronek 2024-05-21 16:16:40 +02:00
• aa122d0bff Shortened national node names in config Croft 2024-05-17 11:44:37 +02:00
• ec4e91fade Corrected data target directory Croft 2024-05-17 09:59:33 +02:00
• c5f82bf93c Removed outdated steps relating to transFAIR Croft 2024-05-17 09:57:31 +02:00
• eb563113e0 Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2 Croft 2024-05-17 09:50:59 +02:00
• a10d0f9605 Added instructions for starting/stopping ECDC Bridgeheads Croft 2024-05-17 09:49:39 +02:00
• e5efd42861 fix: Disable landing page for now pro/lemedart janskiba 2024-05-13 13:56:58 +00:00
• f139965460 feat: Add root cert janskiba 2024-05-13 12:02:55 +00:00