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4abe193c5874b6e02a42a9b0a0a4607439ed70f0
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Author SHA1 Message Date
Croft 4abe193c58 Made the file type more explicit. 2024-02-13 14:08:53 +01:00
Croft 5e8db39e2a Data needs to be readable 2024-02-13 14:05:48 +01:00
Croft b28a48da0a Needed sudo 2024-02-13 14:02:19 +01:00
Croft 7c2e9af947 Set up sensible volumes for TransFAIR 
Also gave instructions to copy over data file.
 2024-02-13 14:00:21 +01:00
Croft 81e5a6ea3f Explained the file edits for EHDS2 2024-02-13 13:42:55 +01:00
Croft a364a4b3f8 Added instructions for getting EHDS2 branch 2024-02-13 13:35:52 +01:00
Croft 9459e1a979 Inserted ECDC-specific URLs and certificates 
Also updated README to include instructions for manual Beam
registration.
 2024-02-13 13:19:41 +01:00
Croft d5760ed3d0 Modified instructions for ECDC 
Also included a template configuration file.
 2024-02-12 16:40:32 +01:00
Croft 8af5cf3f01 Changes made for EHDS2 
The EHDS2 project has initiated a use case for antibiotic resistance
under the control of the ECDC. This branch caters for the ECDC
requirements.

Specifically, it contains the ETL to transform the ECDC CSV format to
FHIR, plus additional configuration options that have been packaged into
the bbmri project.
 2024-02-12 16:07:57 +01:00
Croft 16211cfedf Added Blaze performance info to README 2023-12-05 13:05:10 +01:00
Croft 5558d4fefc Merge branch 'main' into documentation/gba_additions 2023-11-08 10:05:00 +01:00
Croft 545c6175f5 Replaced reference to "bbmri" with more generic "project". 2023-11-08 09:55:21 +01:00
Croft 096225a77d Incorporated Patrick's comments for PR 130 2023-11-06 09:28:43 +01:00
Croft d9794a1eea Information about loading data into the Bridgehead's FHIR store 
Added this information because many sites have asked about it.
 2023-10-20 10:21:52 +02:00
Croft b3ace55898 Mentioned data protection concept and added GBA Firewall change 2023-09-25 13:48:41 +02:00
Croft 60e0db00a7 Changed section title in TOC 2023-09-01 14:02:46 +02:00
Croft 42300e923f Corrected URL 2023-08-30 11:53:06 +02:00
Croft 6b025a8f6a Merge branch 'main' into main_tls_docu 2023-08-30 11:52:13 +02:00
Croft dddbf0efd0 Zdenkas updates for Directory and Collection usage 
This updates documentatin only.
 2023-08-29 10:41:25 +02:00
Croft 66deff38a2 Corrected Docker link 2023-08-28 10:24:18 +02:00
Croft eeba6bce39 Added info about git and Docker proxy to documenation. 2023-08-28 10:15:19 +02:00
Croft 705fbeaf97 Added advice for finding PEM files 2023-08-14 13:18:42 +02:00
Croft 8c45e1da80 Added URLs that need to be accessible for the installation to work. 2023-07-27 09:44:55 +02:00
Croft 1565907243 Minor text and formatting improvements 2023-06-01 10:47:30 +02:00
Croft 906b98f26e Simplified the Directory registration section 2023-06-01 10:40:48 +02:00
Croft a00fed7df2 Changed as result of onboarding experience on the 30th 
* Proxy and firewall adjustments were highlighted.
* The need to register with the Directory and obtain a default
  Collection ID was mentioned.
 2023-06-01 10:26:14 +02:00
Croft 48dd477a94 Removed non-functioning links from Table of Contents 
Removed Git and Docker from Requirements -> Software, since they are
no longer used.
 2023-04-24 10:33:04 +02:00
Croft f4e65cc3d0 Implemented Torbens request for PR 53 2023-03-31 11:55:19 +02:00
Croft e124e34d1e Merge branch 'directory_sync' of https://github.com/samply/bridgehead into directory_sync 2023-03-31 10:04:28 +02:00
Croft fa41f8d77f Changed image to docker.verbis.dkfz.de/cache/ 
Requested by Torben Brenner in PR 53
 2023-03-31 10:01:51 +02:00
Croft 8deafe2023 Merge branch 'main' into update_readme_for_installation 2023-03-22 09:56:11 +01:00
Croft bedad57f41 Changes for Directory sync PR 53 
* Change docker-compose.yml to reduce the number of environment
  variables being passed to Directory sync.
* Improve documentation.
 2023-03-14 09:59:37 +01:00
Croft 8dd1b01842 Updates for PR52 
* Incorporated some of Martin's suggestions (the ones where I had no questions)
* Updated the table of contents to reflect the current structure of the document.
 2023-02-20 16:17:45 +01:00
Croft 068125c062 Updated environemnt variable names so that they start with "DS_" 2023-02-08 11:03:35 +01:00
Croft 92dd4b84c1 Incorporated new environemnt variable nameing for Directory sync 2023-01-31 09:43:26 +01:00
Croft 3e55030b1b Added a Directory sync component 
* Added new container to bbmri/docker-compose.yml.
* Added set up documentation to README.
 2023-01-27 13:49:52 +01:00
Croft 6123a9aeba Addressed Torben's comments to PR 52 
- Included email for CCP repositories.
- Used journalctl instead of docker ps for Bridgehead status.
 2023-01-27 11:08:00 +01:00
Croft 7d9cec562e Corrected site naming convention to comply with DKTK 2023-01-27 09:46:30 +01:00
Croft 90fe31b6c9 Described Docker logging in README 2023-01-26 11:15:55 +01:00
Croft 92d88ad815 Added new section for testing the Bridgehead 2023-01-26 09:37:44 +01:00
Croft d2c5ec0418 Added instructions for Bridgehead de-install 2023-01-25 14:09:14 +01:00
Croft 92ccb78674 Fix for Tobias' comment in PR52 2023-01-23 14:49:03 +01:00
Croft 0c2873132a Included site naming conventions 2023-01-19 11:22:48 +01:00
Croft ee6f60ef65 Enhanced the installation documentation. 
Explained the following:

* Bridgehead projects
* Configuration repository
 2023-01-19 09:59:47 +01:00
Croft cb57aad949 Updated Documentation 
* Removed sections that are no longer relevant
* Added some additional information, particularly regarding registration with Beam and monitoring
* Moved some sections around to get a better structure
 2022-11-14 11:51:29 +01:00
Croft e2f92017c2 Correcting landing page indent 
Original indent was one space, should have been 2 spaces, otherwise
you get parse errors.
 2022-10-28 11:04:20 +02:00