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bridgehead
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617 Commits

Author SHA1 Message Date
Croft 99956f3477 Added instructions to get latest TransFAIR 2024-02-14 13:10:07 +01:00
Croft d73e6ee7a3 Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2 2024-02-14 11:18:37 +01:00
Croft b6bfaba855 Removed unnecessary chown 2024-02-14 11:17:28 +01:00
Croft 5bd9baaff7 Corrected things that led to errors during install 2024-02-14 11:16:39 +01:00
Patrick Skowronek a629d87a5f Inserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right url 2024-02-14 10:19:19 +01:00
Croft 4abe193c58 Made the file type more explicit. 2024-02-13 14:08:53 +01:00
Croft 5e8db39e2a Data needs to be readable 2024-02-13 14:05:48 +01:00
Croft b28a48da0a Needed sudo 2024-02-13 14:02:19 +01:00
Croft 7c2e9af947 Set up sensible volumes for TransFAIR 
Also gave instructions to copy over data file.
 2024-02-13 14:00:21 +01:00
Croft 81e5a6ea3f Explained the file edits for EHDS2 2024-02-13 13:42:55 +01:00
Croft a364a4b3f8 Added instructions for getting EHDS2 branch 2024-02-13 13:35:52 +01:00
Croft 9459e1a979 Inserted ECDC-specific URLs and certificates 
Also updated README to include instructions for manual Beam
registration.
 2024-02-13 13:19:41 +01:00
Croft d5760ed3d0 Modified instructions for ECDC 
Also included a template configuration file.
 2024-02-12 16:40:32 +01:00
Croft 8af5cf3f01 Changes made for EHDS2 
The EHDS2 project has initiated a use case for antibiotic resistance
under the control of the ECDC. This branch caters for the ECDC
requirements.

Specifically, it contains the ETL to transform the ECDC CSV format to
FHIR, plus additional configuration options that have been packaged into
the bbmri project.
 2024-02-12 16:07:57 +01:00
DavidCroftDKFZ f3abde1dfd
Merge pull request #138 from samply/documentation/blaze_resources 
Added Blaze performance info to README
 2024-02-09 11:07:24 +01:00
Martin Lablans 6550c0cdab
Merge pull request #147 from samply/fix/set-focus-version-to-main 
fix: set focus version to main
 2024-02-08 13:42:10 +01:00
Torben Brenner 2d5b6e6932
fix: set focus version to main 2024-02-08 12:30:42 +01:00
DavidCroftDKFZ 40d991d94e
Merge pull request #124 from samply/documentation/gba_additions 
Mentioned data protection concept and added GBA Firewall change
 2024-01-25 13:42:39 +01:00
Enola Knezevic ae02526baf
Merge pull request #142 from samply/addTestInstancesForBbmri 
Tested for test GBN and ERIC BHs
 2024-01-16 13:03:12 +01:00
Pierre Delpy 0fd2481425
Merge pull request #143 from samply/mtba-hotfix 
Hotfix Pierre: Use version 1.0.0 for MTBA
 2024-01-09 12:50:34 +01:00
Martin Lablans 5ba1a1a820 Fix variable visibility 2024-01-09 11:47:02 +01:00
Martin Lablans ea51fc5910
Hotfix Pierre: Use version 1.0.0 for MTBA 2024-01-09 11:32:01 +01:00
Patrick Skowronek c4018aae08 fixed gbn broker url 2024-01-09 07:53:44 +01:00
Enola Knezevic 417c158435 GBN broker IDs 2024-01-08 16:26:07 +01:00
Enola Knezevic 00030a6141 GBN variable names 2024-01-08 16:15:46 +01:00
Martin Lablans 29fb0e7099 Use focus tag depending on ENVIRONMENT 2024-01-08 15:49:46 +01:00
Martin Lablans 00cae67fa1 Add missing switch-case for gbn 2024-01-08 15:49:28 +01:00
Martin Lablans 2074461ee7 Use new variable ENVIRONMENT in /etc/bridgehead; defaults to "production". 2024-01-08 13:03:12 +01:00
Patrick Skowronek 954d46efb1 Added test root certs and logic for beam to use test brokers 2024-01-05 11:58:42 +01:00
Tobias Kussel 48558812aa
Merge pull request #141 from samply/feature/nngm-module-in-minimal 
Add nngm module to minimal project
 2023-12-18 10:53:53 +01:00
Tobias Kussel a80a980cea
Merge pull request #140 from samply/feature/dnpm-node 
Feature/dnpm node
 2023-12-18 10:53:39 +01:00
Tobias Kussel 2606c62b1c
Merge pull request #139 from samply/fix/dnpm-connect 
Cleanup dnpm connect module
 2023-12-18 10:53:25 +01:00
Tobias Kussel f66f2755d8 Change landing page path override to /landing 2023-12-15 13:32:00 +00:00
Tobias Kussel 842c83c66f Use updated nngm module setup 2023-12-15 10:39:50 +00:00
Tobias Kussel d28a3ac889 Add dnpm node module to bbmri project 2023-12-15 09:46:40 +00:00
Tobias Kussel fb6af1c4af Add nngm module to minimal project 2023-12-15 09:43:31 +00:00
Tobias Kussel c02da838c7 Cleanup dnpm connect module 2023-12-15 09:41:11 +00:00
Tobias Kussel 459fa7f78e Add DNPM Node feature to minimal 2023-12-15 09:24:06 +00:00
d.croft@dkfz-heidelberg.de 28c38ed569 Provided a more general relation between resource count & disk space 2023-12-08 10:37:08 +01:00
Croft 16211cfedf Added Blaze performance info to README 2023-12-05 13:05:10 +01:00
djuarezgf 0b90cdb769
Merge pull request #137 from samply/mtba-hotfix-image 
set mtba image to latest
 2023-11-30 15:00:02 +01:00
Pierre Delpy 9bf1b42003
set mtba image to latest 2023-11-30 14:58:54 +01:00
djuarezgf 7b96864e63
Merge pull request #136 from samply/bugfix/mtba-1.0.0 
Bugfix: MTBA 1.0.0
 2023-11-30 13:57:58 +01:00
juarez 2ba9645ab4 Bugfix: MTBA 1.0.0 2023-11-30 12:29:58 +01:00
DavidCroftDKFZ 6457b21ac6
Merge pull request #130 from samply/documentation/data_load 
Information about loading data into the Bridgehead's FHIR store
 2023-11-21 11:10:52 +01:00
patrickskowronekdkfz 7ce501548a
Merge pull request #134 from samply/feature/ccp-obfuscation 
Enable obfuscation for ccp queries
 2023-11-17 13:50:34 +01:00
Croft 5558d4fefc Merge branch 'main' into documentation/gba_additions 2023-11-08 10:05:00 +01:00
Croft 545c6175f5 Replaced reference to "bbmri" with more generic "project". 2023-11-08 09:55:21 +01:00
Croft 096225a77d Incorporated Patrick's comments for PR 130 2023-11-06 09:28:43 +01:00
Tobias Kussel 2252504d78 add bwhc node module 2023-11-03 07:33:16 +00:00