samply
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bridgehead
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412 Commits

Author SHA1 Message Date
Gerhard Salvini 146235236b Removed stuff accumulated during testing phase 
Most of the things added during testing were not necessary and they were
removed. This had the additional advantage that many files are now identical
to their equivalents in the develop branch, making the diff more manageable.
 2025-02-06 09:28:48 +01:00
Gerhard Salvini ed95dff63e Merge branch 'develop' into metadata_fb 2025-02-05 14:02:47 +01:00
Jan 721627a78f
feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
DavidCroftDKFZ 710092c020 Autogenerate secrets for feedback-agent 2025-02-05 11:17:38 +01:00
DavidCroftDKFZ 9977578aa5 Changes for metadata feedback 
These changes fall into the following categories:

* Integration of the feedback components into Traefik.
* Small tweaks to Bridgehead parameters needed by metadata feedback.
* Reverting changes made to some files for testing purposes.
 2025-02-04 14:55:08 +01:00
patrickskowronekdkfz 1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfz 3d1105b97c
Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
Jan 5c28e704d2
fix: remove `restart: always` in compose files (#261) 2025-01-21 09:27:27 +01:00
Enola Knezevic 45aefd24e5
renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfz 122ff16bb1
fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgf 967e45624e
Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias Kussel 8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
Jan 52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholz 26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00
Pierre Delpy cf5230963c
feat: add focus tags in ccp and bbmri (#240) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2024-10-21 11:00:01 +02:00
Bridgehead User 634d4e2a4b Added comments explaining how things have been changed for local testing 2024-10-18 13:32:06 +02:00
Bridgehead User bc24599c54 Beam suppressed 
Changes have been made so that the Bridgehead can run without Beam.
 2024-10-18 11:15:18 +02:00
patrickskowronekdkfz 3312ca8a64
feat: added blaze cql cache (#236) 2024-10-10 14:34:28 +02:00
Patrick Skowronek 23981062bb Move ppi to id-management 2024-10-10 13:27:24 +02:00
Patrick Skowronek 8e7fe6851e fix: use correct mainzelliste api key 2024-10-10 13:11:43 +02:00
Patrick Skowronek 760d599b7c Add CCP-PPI 2024-10-10 12:56:36 +02:00
Torben Brenner eb2955872f fix: allow usage of centraxx interface without login 
Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
 2024-10-01 13:30:23 +02:00
p.delpy@dkfz-heidelberg.de f0bdb5c146 fix: re-add modules 2024-09-12 09:25:38 +02:00
Pierre Delpy c585322ee7
Merge pull request #226 from samply/main 
Update Develop from Main
 2024-09-12 08:22:17 +02:00
davidmscholz ed8dacaa59
Fix fhir2sql db pw generation (#219) 
fix postgresql password generation so that the password does not contain problematic characters that mess with the connection string
 2024-08-29 09:15:22 +02:00
Jan 3fe781255b
feat: Configure beam-connect to trust ds-orchestrator beam proxy (#220) 2024-08-29 09:07:50 +02:00
Torben Brenner 6228cb3762 fix: specify host for id-management login 
Otherwise traefik will match the route with the one specified in datashield-compose.yml
 2024-08-19 17:09:10 +02:00
Torben Brenner 33843fe961 fix: switch id-management to keycloak 2024-08-19 14:43:21 +02:00
Tobias Kussel 9c941853bd
Merge pull request #196 from samply/new-dashboard-backend 
Add new/additional dashboard backend
 2024-08-01 10:05:32 +02:00
janskiba 83b653e0c3 feat: Configure beam-connect to trust ds-orchestrator beam proxy 2024-07-31 07:18:30 +00:00
Tobias Kussel 2e5aeabca8 Rename fhir2sql module files 2024-07-30 07:44:47 +00:00
Tobias Kussel af44b6b446 Fix depends_on syntax 2024-07-30 07:40:49 +00:00
davidmscholz 5ed07423f3 fix dashboard-compose 2024-07-30 09:24:07 +02:00
Martin Lablans 4ab10ff71d In ENVIRONMENT=production, use main tag for Samply.Beam. 2024-07-29 13:50:30 +02:00
davidmscholz df08d67839 add optional dashboard module 2024-07-29 10:45:00 +02:00
Torben Brenner 023be58528
Merge pull request #195 from samply/feature/caching-ccp 
add caching in focus
 2024-07-26 14:07:15 +02:00
Pierre Delpy d316f1c798 add caching in focus 2024-07-24 13:56:53 +02:00
djuarezgf 293810f254 Added: exporter with blaze-secondary 2024-07-18 14:06:47 +02:00
p.delpy@dkfz-heidelberg.de 6b4480c54b workaround: add second blaze 2024-07-18 14:06:47 +02:00
Pierre Delpy b36c9ae03e
Fix patientlisturl in obds2fhir-rest-compose.yml 2024-07-16 10:49:23 +02:00
Pierre Delpy 91dc31d039 fix: use correct ID management flag for oBDS2FHIR 2024-07-08 14:31:09 +02:00
janskiba 9e4bc214ce fix: Fix traefik label for oauth2 redirect 2024-07-03 13:01:02 +00:00
Pierre Delpy 2ee8e0185a feature: upgrade to oBDS2FHIR 2024-07-02 08:57:15 +02:00
Martin Lablans f28e3c2cd2 Remove unnecessary default values 2024-07-01 15:19:44 +02:00
Martin Lablans 91ff51304b Add new dashboard backend 2024-07-01 15:14:38 +02:00
Torben Brenner f7751b9d92 fix: set blaze to version 0.28 
The 0.28 release is not downgradeable, therefore switching again to 0.28
 2024-06-28 14:29:56 +02:00
Torben Brenner 0db7df1440
Update docker-compose.yml 2024-06-28 13:57:30 +02:00
janskiba e72c996952 feat: allow setting focus retry count and increase default 2024-06-13 07:29:54 +00:00
Martin Lablans 4fc53c00bf Fix typo 2024-06-11 08:41:35 +02:00
Patrick Skowronek 033da484d1 switch focus of ccp to tag 2024-05-21 16:16:40 +02:00