Gerhard Salvini
146235236b
Removed stuff accumulated during testing phase
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Most of the things added during testing were not necessary and they were
removed. This had the additional advantage that many files are now identical
to their equivalents in the develop branch, making the diff more manageable.
2025-02-06 09:28:48 +01:00
Gerhard Salvini
ed95dff63e
Merge branch 'develop' into metadata_fb
2025-02-05 14:02:47 +01:00
Jan
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
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* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
DavidCroftDKFZ
710092c020
Autogenerate secrets for feedback-agent
2025-02-05 11:17:38 +01:00
DavidCroftDKFZ
9977578aa5
Changes for metadata feedback
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These changes fall into the following categories:
* Integration of the feedback components into Traefik.
* Small tweaks to Bridgehead parameters needed by metadata feedback.
* Reverting changes made to some files for testing purposes.
2025-02-04 14:55:08 +01:00
patrickskowronekdkfz
1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-21 09:30:20 +01:00
patrickskowronekdkfz
3d1105b97c
Update: Blaze to version 0.31 ( #260 )
2025-01-21 09:28:47 +01:00
Jan
5c28e704d2
fix: remove restart: always in compose files ( #261 )
2025-01-21 09:27:27 +01:00
Enola Knezevic
45aefd24e5
renamed exporter API key to EXPORTER_API_KEY ( #252 )
2024-12-06 11:27:38 +01:00
patrickskowronekdkfz
122ff16bb1
fix: use verbis cache image instead of docker-hub ( #250 )
2024-11-12 09:58:17 +01:00
djuarezgf
967e45624e
Add exporter configuration to focus ( #249 )
2024-11-05 15:46:00 +01:00
Tobias Kussel
8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi
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Feat/ccp ppi
2024-11-05 13:59:01 +01:00
Jan
52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus ( #245 )
2024-11-05 13:34:36 +01:00
davidmscholz
26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql ( #244 )
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* add and set FOCUS_ENDPOINT_TYPE
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2024-10-30 15:21:15 +01:00
Pierre Delpy
cf5230963c
feat: add focus tags in ccp and bbmri ( #240 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2024-10-21 11:00:01 +02:00
Bridgehead User
634d4e2a4b
Added comments explaining how things have been changed for local testing
2024-10-18 13:32:06 +02:00
Bridgehead User
bc24599c54
Beam suppressed
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Changes have been made so that the Bridgehead can run without Beam.
2024-10-18 11:15:18 +02:00
patrickskowronekdkfz
3312ca8a64
feat: added blaze cql cache ( #236 )
2024-10-10 14:34:28 +02:00
Patrick Skowronek
23981062bb
Move ppi to id-management
2024-10-10 13:27:24 +02:00
Patrick Skowronek
8e7fe6851e
fix: use correct mainzelliste api key
2024-10-10 13:11:43 +02:00
Patrick Skowronek
760d599b7c
Add CCP-PPI
2024-10-10 12:56:36 +02:00
Torben Brenner
eb2955872f
fix: allow usage of centraxx interface without login
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Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
2024-10-01 13:30:23 +02:00
p.delpy@dkfz-heidelberg.de
f0bdb5c146
fix: re-add modules
2024-09-12 09:25:38 +02:00
Pierre Delpy
c585322ee7
Merge pull request #226 from samply/main
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Update Develop from Main
2024-09-12 08:22:17 +02:00
davidmscholz
ed8dacaa59
Fix fhir2sql db pw generation ( #219 )
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fix postgresql password generation so that the password does not contain problematic characters that mess with the connection string
2024-08-29 09:15:22 +02:00
Jan
3fe781255b
feat: Configure beam-connect to trust ds-orchestrator beam proxy ( #220 )
2024-08-29 09:07:50 +02:00
Torben Brenner
6228cb3762
fix: specify host for id-management login
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Otherwise traefik will match the route with the one specified in datashield-compose.yml
2024-08-19 17:09:10 +02:00
Torben Brenner
33843fe961
fix: switch id-management to keycloak
2024-08-19 14:43:21 +02:00
Tobias Kussel
9c941853bd
Merge pull request #196 from samply/new-dashboard-backend
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Add new/additional dashboard backend
2024-08-01 10:05:32 +02:00
janskiba
83b653e0c3
feat: Configure beam-connect to trust ds-orchestrator beam proxy
2024-07-31 07:18:30 +00:00
Tobias Kussel
2e5aeabca8
Rename fhir2sql module files
2024-07-30 07:44:47 +00:00
Tobias Kussel
af44b6b446
Fix depends_on syntax
2024-07-30 07:40:49 +00:00
davidmscholz
5ed07423f3
fix dashboard-compose
2024-07-30 09:24:07 +02:00
Martin Lablans
4ab10ff71d
In ENVIRONMENT=production, use main tag for Samply.Beam.
2024-07-29 13:50:30 +02:00
davidmscholz
df08d67839
add optional dashboard module
2024-07-29 10:45:00 +02:00
Torben Brenner
023be58528
Merge pull request #195 from samply/feature/caching-ccp
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add caching in focus
2024-07-26 14:07:15 +02:00
Pierre Delpy
d316f1c798
add caching in focus
2024-07-24 13:56:53 +02:00
djuarezgf
293810f254
Added: exporter with blaze-secondary
2024-07-18 14:06:47 +02:00
p.delpy@dkfz-heidelberg.de
6b4480c54b
workaround: add second blaze
2024-07-18 14:06:47 +02:00
Pierre Delpy
b36c9ae03e
Fix patientlisturl in obds2fhir-rest-compose.yml
2024-07-16 10:49:23 +02:00
Pierre Delpy
91dc31d039
fix: use correct ID management flag for oBDS2FHIR
2024-07-08 14:31:09 +02:00
janskiba
9e4bc214ce
fix: Fix traefik label for oauth2 redirect
2024-07-03 13:01:02 +00:00
Pierre Delpy
2ee8e0185a
feature: upgrade to oBDS2FHIR
2024-07-02 08:57:15 +02:00
Martin Lablans
f28e3c2cd2
Remove unnecessary default values
2024-07-01 15:19:44 +02:00
Martin Lablans
91ff51304b
Add new dashboard backend
2024-07-01 15:14:38 +02:00
Torben Brenner
f7751b9d92
fix: set blaze to version 0.28
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The 0.28 release is not downgradeable, therefore switching again to 0.28
2024-06-28 14:29:56 +02:00
Torben Brenner
0db7df1440
Update docker-compose.yml
2024-06-28 13:57:30 +02:00
janskiba
e72c996952
feat: allow setting focus retry count and increase default
2024-06-13 07:29:54 +00:00
Martin Lablans
4fc53c00bf
Fix typo
2024-06-11 08:41:35 +02:00
Patrick Skowronek
033da484d1
switch focus of ccp to tag
2024-05-21 16:16:40 +02:00
